Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000416`

染色体: Chr07 坐标: 2865000-2877630 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000416`
名称	SmilChr07G000416
描述	SAC3 family protein B
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	2865000 - 2877630 / `+`

ID 对照

NCBI Gene ID	`LOC130991612`
GeneID	`130991612`
locus_tag	`-`
NCBI Name	`LOC130991612`
原始查询	`LOC130991612`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SAC3 family protein B
产物	SAC3 family protein B
Arabidopsis	`AT3G06290` (SAC3B) SAC3/GANP/Nin1/mts3/eIF-3 p25 family [Source:NCBI gene (formerly Entrezgene);Acc:819803] identity=60; qcov=0.336; evalue=0; confidence=low
Rice	`Os07g0646000` - identity=30.2; qcov=0.122; evalue=8.54e-19; confidence=weak
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006406 (mRNA export from nucleus); GO:0070390 (transcription export complex 2)
KEGG	-
Pfam	PF03399 (SAC3_GANP)
InterPro	-
eggNOG	-
NR	GeneID:130991612

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057771900.1`
2	Cytoplasm	细胞质	0.40000	`XP_057771902.1`
3	Chromosome	染色体	0.00000	`XP_057771900.1`
4	Centromere	着丝粒	0.00000	`XP_057771900.1`
5	Chromatin	染色质	0.00000	`XP_057771900.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:2865287`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C65
`Chr7:2865287`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr7:2865300`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr7:2867430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr7:2867527`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,B13,B68,B98
`Chr7:2867958`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B13,B68,B98
`Chr7:2867970`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr7:2868365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,B13,B68
`Chr7:2868374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr7:2869247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,B51
`Chr7:2870170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr7:2870187`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771900.1

1688 aa

844

1688

SAC3_GANP

PF03399 SAC3_GANP 521-814 aa

XP_057771901.1

1687 aa

844

1687

SAC3_GANP

PF03399 SAC3_GANP 520-813 aa

XP_057771902.1

1658 aa

829

1658

SAC3_GANP

PF03399 SAC3_GANP 491-784 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771900.1`	Pfam	`PF03399`	SAC3_GANP	Family	521	814	2.1e-80	270.9	SAC3/GANP family
`XP_057771901.1`	Pfam	`PF03399`	SAC3_GANP	Family	520	813	2.1e-80	270.9	SAC3/GANP family
`XP_057771902.1`	Pfam	`PF03399`	SAC3_GANP	Family	491	784	2e-80	271.0	SAC3/GANP family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057915917.1
CATCGGTATACGACGACGTATCCTCTGGCAATCTGCATCACCATCTTCTCAATCTCAAAAACCCTTCCCCCAATTTAGAACCCTAATAATGGATGCTGCAACTCCTTCTTATCGGAAATAAAGAGGACACCTCTCTCTCTCTCTACACATGTGCTTATAAATCTATGTTGCTGGATTTTGAGACGTACACGTTGTACATCTGTTGATCACAATATTTGAGATTTAAGAAGACTATGGCATTTAGCGGATTTGGGAAGAAC...

XM_057915918.1
ATCGGTATACGACGACGTATCCTCTGGCAATCTGCATCACCATCTTCTCAATCTCAAAAACCCTTCCCCCAATTTAGAACCCTAATAATGGATGCTGCAACTCCTTCTTATCGGAAATAAAGAGGACACCTCTCTCTCTCTCTACACATGTGCTTATAAATCTATGTTGCTGGATTTTGAGACGTACACGTTGTACATCTGTTGATCACAATATTTGAGATTTAAGAAGACTATGGCATTTAGCGGATTTGGGAAGAACT...

CDS

3 records

下载 CDS FASTA

LOC130991612
ATGGCATTTAGCGGATTTGGGAAGAACTCAGGTCCGAGTGCACAGGCTGGGGCTCAAAACCCTTTCGCCAATTTTCCTCGGCATCCGTCCCCCTCTTCGCCACTTCCAGTCCCGCCCAGGTCCTCGATTGACTATAGGGATCTTGACGCTTCTGAGGGCATATCTTCGCGGCCTTTTATTTCCACTCATTCTCTTCCAGGCACACAAAAAAGCAATGAGCCTCCTTTCAGACGGGGTGATGTGAAGGCACATTCACTGAA...

LOC130991612
ATGGCATTTAGCGGATTTGGGAAGAACTCAGGTCCGAGTGCACAGGCTGGGGCTCAAAACCCTTTCGCCAATTTTCCTCGGCATCCGTCCCCCTCTTCGCCACTTCCAGTCCCGCCCAGGTCCTCGATTGACTATAGGGATCTTGACGCTTCTGAGGGCATATCTTCGCGGCCTTTTATTTCCACTCATTCTCTTCCAGGCACACAAAACAATGAGCCTCCTTTCAGACGGGGTGATGTGAAGGCACATTCACTGAAAGA...

Protein

3 records

下载 Protein FASTA

XP_057771900.1
MAFSGFGKNSGPSAQAGAQNPFANFPRHPSPSSPLPVPPRSSIDYRDLDASEGISSRPFISTHSLPGTQKSNEPPFRRGDVKAHSLKDPAAQYQRPPADLQQVTSRHLRPGGPIKTAEVQSIRRTSSPFTQSPHEISNASRSPLGSDKSYSDPYGARLSRPVSHNSVYAGGQRPHIQDVQQYSPSPVWVNNSKLSSHNITPPVQERLSPVFPSGGTHQPGPMFKTKHTDGPLQKRTRSPTLPTATVFSSENARSDGPKRS...

XP_057771901.1
MAFSGFGKNSGPSAQAGAQNPFANFPRHPSPSSPLPVPPRSSIDYRDLDASEGISSRPFISTHSLPGTQNNEPPFRRGDVKAHSLKDPAAQYQRPPADLQQVTSRHLRPGGPIKTAEVQSIRRTSSPFTQSPHEISNASRSPLGSDKSYSDPYGARLSRPVSHNSVYAGGQRPHIQDVQQYSPSPVWVNNSKLSSHNITPPVQERLSPVFPSGGTHQPGPMFKTKHTDGPLQKRTRSPTLPTATVFSSENARSDGPKRSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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