当前解析结果
SmilChr07G000425| 统一新 Gene ID | SmilChr07G000425 |
|---|---|
| 名称 | SmilChr07G000425 |
| 描述 | putative FBD-associated F-box protein At5g22720 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2960732 - 2968781 / - |
| NCBI Gene ID | LOC130991622 |
|---|---|
| GeneID | 130991622 |
| locus_tag | - |
| NCBI Name | LOC130991622 |
| 原始查询 | LOC130991622 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative FBD-associated F-box protein At5g22720 |
| 产物 | putative FBD-associated F-box protein At5g22720 |
| Arabidopsis | AT5G41840 (AT5G41840)F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834189] identity=28.5; qcov=0.498; evalue=3.36e-07; confidence=low |
| Rice | -- |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991622 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057771913.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057771913.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057771913.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057771913.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057771913.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2961066 |
A |
AC |
1bp_insertion | frameshift_variant | 104 | A10,A11,A13,A18,A20,A24,A4,A6,A8,B10,B101,B102,B103,B107,B11,B112,B113,B118,B120,B121,B122,B124,B126,B13,B132,B135,B136,B137,B15,B16,B17,B18,B19,B2,B25,B27,B30,B33,B36,B38,B39,B46,B48,B50,B57,B59,B6,B60,B61,B65,B68,B69,B7,B70,B72,B75,B76,B83,B87,B90,B91,B92,B98,C10,C14,C17,C18,C21,C26,C28,C3,C30,C33,C35,C37,C38,C4,C42,C44,C45,C48,C52,C54,C55,C57,C59,C61,C64,C66,C67,C7,C75,C76,C78,C82,C83,C84,C87,C9,D11,D2,D6,D7,D8 |
Chr7:2961068 |
CG |
C |
1bp_deletion | frameshift_variant | 72 | A10,A11,A18,A20,A4,A6,A8,B10,B102,B103,B107,B11,B112,B118,B120,B121,B122,B126,B135,B136,B137,B15,B16,B17,B19,B2,B23,B27,B30,B33,B36,B46,B48,B50,B57,B59,B6,B61,B69,B72,B75,B83,B90,B91,B92,C10,C14,C18,C21,C28,C3,C30,C33,C35,C37,C38,C4,C54,C55,C57,C64,C66,C67,C7,C76,C78,C83,C84,C9,D11,D2,D7 |
Chr7:2961096 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,C18,C54 |
Chr7:2961107 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr7:2961144 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | D1 |
Chr7:2961144 |
C |
CT |
1bp_insertion | CDS_variant | 1 | D1 |
Chr7:2961164 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr7:2961168 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | D1 |
Chr7:2961168 |
C |
CA |
1bp_insertion | CDS_variant | 1 | D1 |
Chr7:2961191 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B64,D1 |
Chr7:2961192 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,B64,D1 |
Chr7:2961431 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,B66 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。