Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000475`

染色体: Chr07 坐标: 3317252-3324420 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000475`
名称	SmilChr07G000475
描述	ISWI chromatin-remodeling complex ATPase CHR11
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	3317252 - 3324420 / `+`

ID 对照

NCBI Gene ID	`LOC130991668`
GeneID	`130991668`
locus_tag	`-`
NCBI Name	`LOC130991668`
原始查询	`LOC130991668`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ISWI chromatin-remodeling complex ATPase CHR11
产物	ISWI chromatin-remodeling complex ATPase CHR11
Arabidopsis	`AT5G18620` (CHR17) chromatin remodeling factor17 [Source:NCBI gene (formerly Entrezgene);Acc:831980] identity=86.4; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0367900` - identity=86.3; qcov=0.96; evalue=0; confidence=high
GO	GO:0000785 (chromatin); GO:0003677 (DNA binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016887 (ATP hydrolysis activity); GO:0031491 (nucleosome binding); GO:0034728 (nucleosome organization); GO:0042393 (histone binding); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00176 (SNF2-rel_dom); PF00271 (Helicase_C); PF04851 (ResIII); PF09110 (HAND); PF09111 (SLIDE)
InterPro	-
eggNOG	-
NR	GeneID:130991668

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057771982.1`
2	Chromosome	染色体	0.80000	`XP_057771982.1`
3	Nucleoplasm	核质	0.60000	`XP_057771982.1`
4	Nucleolar fibrillar center	Nucleolar fibrillar center	0.20000	`XP_057771982.1`
5	Centromere	着丝粒	0.00000	`XP_057771982.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:3317385`	`T`	`TCA`	2bp_insertion	frameshift_variant	1	D11
`Chr7:3317385`	`T`	`TCA`	2bp_insertion	CDS_variant	1	D11
`Chr7:3317491`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B33,B53
`Chr7:3317566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr7:3318949`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr7:3318952`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr7:3319561`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B131,B56,B96
`Chr7:3320350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B110,B2,B20,C8
`Chr7:3320386`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A23,B138,B44,B8,C20
`Chr7:3321249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B138,B59,B8,C20
`Chr7:3321752`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr7:3321776`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771982.1

1065 aa

532

1065

ResIII

SNF2-rel_dom

Helicase_C

HAND

SLIDE

PF04851 ResIII 186-346 aa PF00176 SNF2-rel_dom 190-467 aa PF00271 Helicase_C 489-602 aa PF09110 HAND 751-834 aa PF09111 SLIDE 895-1005 aa

XP_057771983.1

1064 aa

532

1064

ResIII

SNF2-rel_dom

Helicase_C

HAND

SLIDE

PF04851 ResIII 186-346 aa PF00176 SNF2-rel_dom 190-467 aa PF00271 Helicase_C 489-602 aa PF09110 HAND 751-834 aa PF09111 SLIDE 895-1005 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771982.1`	Pfam	`PF04851`	ResIII	Family	186	346	1.6e-10	41.9	Type III restriction enzyme, res subunit
`XP_057771982.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	190	467	1.4e-100	336.9	SNF2-related domain
`XP_057771982.1`	Pfam	`PF00271`	Helicase_C	Domain	489	602	5.7e-25	88.4	Helicase conserved C-terminal domain
`XP_057771982.1`	Pfam	`PF09110`	HAND	Domain	751	834	8.4e-07	30.5	HAND
`XP_057771982.1`	Pfam	`PF09111`	SLIDE	Domain	895	1005	1.1e-42	145.5	SLIDE
`XP_057771983.1`	Pfam	`PF04851`	ResIII	Family	186	346	1.6e-10	41.9	Type III restriction enzyme, res subunit
`XP_057771983.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	190	467	1.4e-100	336.9	SNF2-related domain
`XP_057771983.1`	Pfam	`PF00271`	Helicase_C	Domain	489	602	5.8e-25	88.4	Helicase conserved C-terminal domain
`XP_057771983.1`	Pfam	`PF09110`	HAND	Domain	751	834	8.4e-07	30.5	HAND
`XP_057771983.1`	Pfam	`PF09111`	SLIDE	Domain	895	1005	1.1e-42	145.5	SLIDE

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915999.1
ACCGCTAACTCAATTGGTCGGTTTCATTTTTCGAAATTTAATATTATACACTTTTTCTTCTCCGCTTTTTCCCCCAAACCGCAAGACTCCGCTACTGTTCGAAGCGGAGGTGAATTACAGAAACCCTCGAAGATGCGGAAACCCTCGCGTGCAAAGGACTCCTCCGACGACACCATGAGTAGCTCCTCGGCCGAGGAGGACCTGGTCAAGGACCAGGTCAACGAAGAGGAAGACGACGACGAGCTCGAGGCGGTGGCTCG...

XM_057916000.1
ACCGCTAACTCAATTGGTCGGTTTCATTTTTCGAAATTTAATATTATACACTTTTTCTTCTCCGCTTTTTCCCCCAAACCGCAAGACTCCGCTACTGTTCGAAGCGGAGGTGAATTACAGAAACCCTCGAAGATGCGGAAACCCTCGCGTGCAAAGGACTCCTCCGACGACACCATGAGTAGCTCCTCGGCCGAGGAGGACCTGGTCAAGGACCAGGTCAACGAAGAGGAAGACGACGACGAGCTCGAGGCGGTGGCTCG...

CDS

2 records

下载 CDS FASTA

LOC130991668
ATGCGGAAACCCTCGCGTGCAAAGGACTCCTCCGACGACACCATGAGTAGCTCCTCGGCCGAGGAGGACCTGGTCAAGGACCAGGTCAACGAAGAGGAAGACGACGACGAGCTCGAGGCGGTGGCTCGCCCTGCCGAAGATTCCGACGACGAGGATGTGCCCAACGCTGCCGCCCAGGACGACGATGACATTGAGGAAGAGGATGTTGTTGCAAATGAAATTTCAAAGCGTGAAAGAGCAAGGCTTAAAGAAATGCAGCG...

Protein

2 records

下载 Protein FASTA

XP_057771982.1
MRKPSRAKDSSDDTMSSSSAEEDLVKDQVNEEEDDDELEAVARPAEDSDDEDVPNAAAQDDDDIEEEDVVANEISKRERARLKEMQRVKKQKIQEILDVQNAAIEADMNNKGKGRLNYLLQQTELFAHFAKGDQSVPQKKGKGRGRHASKITEEEEDEECLKEEEDGLSGTGNTRLLVQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGITGPHMVVAPKSTLGNWMNEIKRFCP...

XP_057771983.1
MRKPSRAKDSSDDTMSSSSAEEDLVKDQVNEEEDDDELEAVARPAEDSDDEDVPNAAAQDDDDIEEEDVVANEISKRERARLKEMQRVKKQKIQEILDVQNAAIEADMNNKGKGRLNYLLQQTELFAHFAKGDQSVPQKKGKGRGRHASKITEEEEDEECLKEEEDGLSGTGNTRLLVQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGITGPHMVVAPKSTLGNWMNEIKRFCP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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