Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000490`

染色体: Chr07 坐标: 3419519-3422545 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000490`
名称	SmilChr07G000490
描述	uncharacterized SmilChr07G000490
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	3419519 - 3422545 / `-`

ID 对照

NCBI Gene ID	`LOC130991682`
GeneID	`130991682`
locus_tag	`-`
NCBI Name	`LOC130991682`
原始查询	`LOC130991682`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:832296]; symbol=AT5G22355; hit=AT5G22355; species=arabidopsis; confidence=low
产物	Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:832296]; symbol=AT5G22355; hit=AT5G22355; species=arabidopsis; confidence=low
Arabidopsis	`AT5G22355` (AT5G22355) Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:832296] identity=25.2; qcov=0.88; evalue=1.67e-29; confidence=low
Rice	`Os07g0609100` (OSJNBb0018L13.13) - identity=31; qcov=0.179; evalue=1.59e-07; confidence=weak
GO	-
KEGG	-
Pfam	PF03107 (C1_2)
InterPro	-
eggNOG	-
NR	GeneID:130991682

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.40000	`XP_057772008.1`
2	Secreted	分泌到胞外	0.20000	`XP_057772008.1`
3	Cell membrane	细胞膜	0.20000	`XP_057772008.1`
4	Vacuole	液泡	0.20000	`XP_057772008.1`
5	Nucleus	细胞核	0.00000	`XP_057772008.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:3419752`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B132,B41,C44,C82
`Chr7:3419753`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B132,B41,C44,C82
`Chr7:3419757`	`A`	`AT`	1bp_insertion	frameshift_variant	25	A10,A13,A25,A6,B11,B139,B31,B35,B42,B43,B48,B5,B61,B64,B65,C3,C31,C34,C35,C37,C40,C43,C45,C47,C63
`Chr7:3419762`	`T`	`TCG`	2bp_insertion	frameshift_variant	4	B132,B41,C44,C82
`Chr7:3419762`	`T`	`TCG`	2bp_insertion	CDS_variant	4	B132,B41,C44,C82
`Chr7:3419763`	`TTA`	`T`	2bp_deletion	frameshift_variant	3	B132,C44,C82
`Chr7:3419763`	`TTA`	`T`	2bp_deletion	CDS_variant	3	B132,C44,C82
`Chr7:3419815`	`C`	`CAA`	2bp_insertion	frameshift_variant	4	A14,A19,B23,C83
`Chr7:3419815`	`C`	`CAA`	2bp_insertion	CDS_variant	4	A14,A19,B23,C83
`Chr7:3419820`	`C`	`T`	EMS_canonical_SNV	stop_gained	26	B104,B118,B119,B127,B132,B26,B37,B41,B44,B47,B55,B63,B67,B7,B81,B83,B86,B88,B90,C44,C51,C53,C6,C78,C9,D4
`Chr7:3419826`	`TA`	`T`	1bp_deletion	frameshift_variant	4	A14,A19,B23,C83
`Chr7:3419826`	`TA`	`T`	1bp_deletion	CDS_variant	4	A14,A19,B23,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772008.1

649 aa

324

649

C1_2

PF03107 C1_2 15-59 aa PF03107 C1_2 70-118 aa PF03107 C1_2 200-249 aa PF03107 C1_2 515-561 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772008.1`	Pfam	`PF03107`	C1_2	Domain	15	59	1.3e-48	163.7	C1 domain
`XP_057772008.1`	Pfam	`PF03107`	C1_2	Domain	70	118	1.3e-48	163.7	C1 domain
`XP_057772008.1`	Pfam	`PF03107`	C1_2	Domain	200	249	1.3e-48	163.7	C1 domain
`XP_057772008.1`	Pfam	`PF03107`	C1_2	Domain	515	561	1.3e-48	163.7	C1 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916025.1
TGATTCCATTCTATATTTGCTATATGTTTCCAAAACTCAAAGCTCCATTCACATCCACCTCTCCCAGAAAAAAATCAATTGTAGTTGAGAAGGAAAAACTCGCACACAAACATAATGTGTGAGGAAGAAAATGAGAGAGACCACTATTGGAAAAAGCACCATCCACTTGCTTTGGTGGAAACTCGCAGCAAAACTGATAAATGTTTCATCTGTAAAAGGAATTTTAGTAGTGGAGAGAAAGTTTATGGATGTGGCGAGAA...

CDS

1 records

下载 CDS FASTA

LOC130991682
ATGTGTGAGGAAGAAAATGAGAGAGACCACTATTGGAAAAAGCACCATCCACTTGCTTTGGTGGAAACTCGCAGCAAAACTGATAAATGTTTCATCTGTAAAAGGAATTTTAGTAGTGGAGAGAAAGTTTATGGATGTGGCGAGAAATGTCGGTATCCAATGCACCAAGAATGTGCAGGACTGCCGATGAAGATTAAACACGCAATGCACCCACAACACATACTCTCTCAAGTATTCCACAACCGTTACGATACCGAAGC...

Protein

1 records

下载 Protein FASTA

XP_057772008.1
MCEEENERDHYWKKHHPLALVETRSKTDKCFICKRNFSSGEKVYGCGEKCRYPMHQECAGLPMKIKHAMHPQHILSQVFHNRYDTEAKACAICGEVAKGVFYRCTSAECMFVMHIRCAQGNGLIDAADDDDDDEQRGSIIDHPSHPRHKLRFTRKCCSFMCDACGTTHEGKSYMCCKANCHYWIHETCASSDLTIKREDHHHPLSLSFHVPPLYMKYDYKCDVCSQYLLSKYWIYHCQLCSYAVHLKCAYKKSPQAREKN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器