当前解析结果
SmilChr07G000491| 统一新 Gene ID | SmilChr07G000491 |
|---|---|
| 名称 | SmilChr07G000491 |
| 描述 | uncharacterized SmilChr07G000491 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3425574 - 3431062 / - |
| NCBI Gene ID | LOC130991683 |
|---|---|
| GeneID | 130991683 |
| locus_tag | - |
| NCBI Name | LOC130991683 |
| 原始查询 | LOC130991683 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830684]; symbol=AT5G07900; hit=AT5G07900; species=arabidopsis; confidence=medium |
| 产物 | Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830684]; symbol=AT5G07900; hit=AT5G07900; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G07900 (AT5G07900)Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830684] identity=36.7; qcov=0.905; evalue=2.78e-71; confidence=medium |
| Rice | Os07g0423000- identity=28.7; qcov=0.908; evalue=2.61e-49; confidence=low |
| GO | GO:0003690 (double-stranded DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0009507 (chloroplast); GO:0009658 (chloroplast organization) |
| KEGG | - |
| Pfam | PF02536 (mTERF) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991683 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057772009.1 |
| 2 | Chloroplast | 叶绿体 | 0.20000 | XP_057772009.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772009.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772009.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772009.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3429915 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B117 |
Chr7:3429915 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B117 |
Chr7:3429943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr7:3429947 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr7:3429987 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B129,B75,C8 |
Chr7:3430022 |
AT |
A |
1bp_deletion | frameshift_variant | 26 | A1,A10,A13,A25,A6,B11,B139,B31,B35,B42,B43,B48,B5,B61,B64,B65,C3,C31,C34,C35,C37,C40,C43,C45,C47,C63 |
Chr7:3430070 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,C7,C84 |
Chr7:3430328 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr7:3430571 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B71,B98,C16,C55 |
Chr7:3430578 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B71,B98,C16,C55 |
Chr7:3430676 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr7:3430720 |
T |
TG |
1bp_insertion | frameshift_variant | 5 | B25,B98,C16,C55,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772009.1PF02536
mTERF 90-302 aa
PF02536
mTERF 274-359 aa
XP_057772010.1PF02536
mTERF 90-302 aa
PF02536
mTERF 274-359 aa
XP_057772012.1PF02536
mTERF 90-302 aa
PF02536
mTERF 274-359 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772009.1 |
Pfam | PF02536 |
mTERF | Family | 90 | 302 | 6e-38 | 131.2 | mTERF |
XP_057772009.1 |
Pfam | PF02536 |
mTERF | Family | 274 | 359 | 6e-38 | 131.2 | mTERF |
XP_057772010.1 |
Pfam | PF02536 |
mTERF | Family | 90 | 302 | 6e-38 | 131.2 | mTERF |
XP_057772010.1 |
Pfam | PF02536 |
mTERF | Family | 274 | 359 | 6e-38 | 131.2 | mTERF |
XP_057772012.1 |
Pfam | PF02536 |
mTERF | Family | 90 | 302 | 5.9e-38 | 131.3 | mTERF |
XP_057772012.1 |
Pfam | PF02536 |
mTERF | Family | 274 | 359 | 5.9e-38 | 131.3 | mTERF |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。