当前解析结果
SmilChr07G000501| 统一新 Gene ID | SmilChr07G000501 |
|---|---|
| 名称 | SmilChr07G000501 |
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3508671 - 3510148 / - |
| NCBI Gene ID | LOC130991692 |
|---|---|
| GeneID | 130991692 |
| locus_tag | - |
| NCBI Name | LOC130991692 |
| 原始查询 | LOC130991692 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 产物 | F-box/LRR-repeat protein At3g26922-like |
| Arabidopsis | AT5G56420 (AT5G56420)F-box/RNI-like/FBD-like domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835743] identity=31.9; qcov=0.661; evalue=8.62e-21; confidence=low |
| Rice | Os10g0126600 (OsFbox512)- identity=26.3; qcov=0.961; evalue=2.04e-13; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991692 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772031.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057772031.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057772031.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057772031.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057772031.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3508811 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,C27 |
Chr7:3508876 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,B78 |
Chr7:3508880 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C21,C28 |
Chr7:3509142 |
A |
AGT |
2bp_insertion | frameshift_variant | 1 | B1 |
Chr7:3509142 |
A |
AGT |
2bp_insertion | CDS_variant | 1 | B1 |
Chr7:3509144 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | B1 |
Chr7:3509144 |
T |
TA |
1bp_insertion | CDS_variant | 1 | B1 |
Chr7:3509184 |
G |
GTT |
2bp_insertion | frameshift_variant | 54 | A13,A14,A21,A25,A6,B103,B105,B106,B108,B111,B115,B124,B125,B135,B140,B17,B2,B20,B22,B26,B30,B35,B36,B39,B4,B5,B65,B66,B67,B70,B73,B82,B86,B9,B90,B94,B99,C10,C14,C20,C21,C24,C27,C31,C40,C63,C70,C71,C73,C76,C77,D10,D11,D2 |
Chr7:3509186 |
T |
TC |
1bp_insertion | frameshift_variant | 41 | A18,A8,B100,B102,B105,B114,B117,B120,B126,B137,B22,B23,B46,B50,B53,B55,B59,B62,B75,B77,B81,B86,B89,C16,C29,C33,C36,C4,C53,C54,C56,C6,C62,C75,C81,C82,C83,C87,D3,D4,D9 |
Chr7:3509204 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B138,B33,D3 |
Chr7:3509214 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B106,C70,D4 |
Chr7:3509215 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772031.1PF00646
F-box 13-53 aa
PF23622
LRR_At1g61320_AtMIF1 84-296 aa
PF24758
LRR_At5g56370 106-244 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772031.1 |
Pfam | PF00646 |
F-box | Domain | 13 | 53 | 7.4e-07 | 29.5 | F-box domain |
XP_057772031.1 |
Pfam | PF23622 |
LRR_At1g61320_AtMIF1 | Repeat | 84 | 296 | 1.4e-07 | 32.0 | At1g61320/AtMIF1, LRR domain |
XP_057772031.1 |
Pfam | PF24758 |
LRR_At5g56370 | Repeat | 106 | 244 | 3.8e-12 | 47.1 | FBD-associated F-box protein At5g56370, LRR repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。