当前解析结果
SmilChr07G000504| 统一新 Gene ID | SmilChr07G000504 |
|---|---|
| 名称 | SmilChr07G000504 |
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3527027 - 3528718 / - |
| NCBI Gene ID | LOC130991695 |
|---|---|
| GeneID | 130991695 |
| locus_tag | - |
| NCBI Name | LOC130991695 |
| 原始查询 | LOC130991695 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 产物 | F-box/LRR-repeat protein At3g26922-like |
| Arabidopsis | AT1G60400 (AT1G60400)F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842335] identity=30.7; qcov=0.776; evalue=7.04e-17; confidence=low |
| Rice | Os10g0128200 (OsFbox517)- identity=25.2; qcov=0.822; evalue=2.29e-12; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991695 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772035.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057772035.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057772035.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057772035.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057772035.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3527637 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | A8,B18,B23,B53,B62,B75,B97,C54,C82,D4 |
Chr7:3527717 |
T |
TA |
1bp_insertion | frameshift_variant | 84 | A11,A16,A4,A5,A9,B1,B102,B107,B108,B11,B110,B111,B112,B118,B121,B126,B134,B136,B14,B17,B2,B20,B22,B3,B33,B35,B38,B46,B50,B55,B65,B72,B74,B76,B77,B79,B82,B83,B85,B89,B90,B91,B95,C20,C21,C23,C29,C30,C33,C34,C35,C37,C38,C39,C4,C42,C44,C45,C46,C47,C51,C56,C57,C60,C66,C67,C68,C69,C7,C73,C74,C77,C78,C8,C83,C84,C85,C86,C87,D1,D10,D11,D6,D9 |
Chr7:3527723 |
CAG |
C |
2bp_deletion | frameshift_variant | 82 | A11,A16,A4,A5,A9,B1,B102,B107,B108,B11,B110,B111,B112,B118,B121,B126,B134,B136,B14,B17,B2,B20,B22,B3,B35,B38,B46,B50,B55,B72,B74,B76,B77,B79,B82,B83,B85,B89,B90,B91,B95,C20,C21,C23,C29,C30,C33,C34,C35,C37,C38,C39,C4,C42,C44,C45,C46,C47,C51,C56,C57,C60,C66,C67,C68,C69,C7,C73,C74,C77,C78,C8,C83,C84,C85,C86,C87,D1,D10,D11,D6,D9 |
Chr7:3527726 |
C |
CTG |
2bp_insertion | frameshift_variant | 81 | A11,A16,A4,A5,A9,B1,B102,B107,B108,B11,B110,B111,B112,B118,B121,B126,B134,B136,B14,B17,B2,B20,B22,B3,B35,B38,B46,B50,B55,B72,B74,B77,B79,B82,B83,B85,B89,B90,B91,B95,C20,C21,C23,C29,C30,C33,C34,C35,C37,C38,C39,C4,C42,C44,C45,C46,C47,C51,C56,C57,C60,C66,C67,C68,C69,C7,C73,C74,C77,C78,C8,C83,C84,C85,C86,C87,D1,D10,D11,D6,D9 |
Chr7:3527729 |
A |
ATT |
2bp_insertion | stop_gained,frameshift_variant | 4 | B33,C47,C5,C74 |
Chr7:3527729 |
A |
ATT |
2bp_insertion | CDS_variant | 4 | B33,C47,C5,C74 |
Chr7:3527735 |
A |
AT |
1bp_insertion | frameshift_variant | 154 | A1,A11,A16,A19,A2,A20,A21,A22,A24,A25,A3,A4,A5,A7,A9,B1,B102,B105,B106,B107,B108,B11,B110,B111,B112,B113,B114,B117,B118,B121,B122,B126,B127,B130,B132,B133,B134,B136,B139,B14,B140,B15,B16,B17,B18,B20,B22,B25,B26,B3,B30,B31,B33,B35,B36,B38,B4,B42,B44,B45,B46,B47,B48,B5,B50,B55,B61,B64,B65,B66,B67,B70,B71,B72,B73,B74,B77,B79,B82,B83,B85,B86,B89,B90,B91,B95,B96,B98,C10,C13,C14,C20,C21,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C33,C34,C35,C36,C37,C38,C39,C4,C42,C44,C45,C46,C47,C5,C51,C52,C55,C56,C57,C58,C60,C61,C66,C67,C68,C69,C7,C70,C71,C73,C74,C76,C78,C79,C8,C81,C83,C84,C85,C86,C87,C9,D1,D10,D11,D3,D5,D6,D7,D8,D9 |
Chr7:3527747 |
TCG |
T |
2bp_deletion | frameshift_variant | 73 | A1,A19,A2,A20,A21,A22,A24,A25,A3,A7,B105,B106,B113,B114,B117,B122,B127,B130,B132,B133,B139,B140,B16,B25,B26,B30,B31,B33,B36,B4,B44,B45,B47,B5,B55,B61,B64,B65,B66,B67,B70,B71,B73,B86,B96,B98,C10,C13,C14,C24,C25,C26,C28,C3,C31,C36,C5,C52,C55,C58,C61,C69,C70,C71,C76,C79,C81,C9,D1,D3,D5,D7,D8 |
Chr7:3527782 |
TC |
T |
1bp_deletion | frameshift_variant | 135 | A1,A11,A19,A2,A20,A21,A24,A25,A3,A4,A5,B1,B102,B106,B107,B108,B11,B110,B111,B112,B113,B114,B117,B118,B122,B123,B126,B127,B130,B133,B134,B136,B139,B14,B140,B16,B17,B20,B25,B26,B3,B30,B31,B33,B35,B36,B38,B4,B42,B44,B45,B46,B47,B5,B50,B55,B61,B64,B65,B66,B67,B71,B72,B73,B74,B77,B79,B82,B83,B85,B86,B89,B90,B95,B96,B98,C10,C13,C14,C16,C22,C23,C24,C25,C26,C28,C29,C3,C31,C33,C34,C35,C36,C37,C38,C39,C4,C42,C44,C45,C46,C47,C5,C51,C52,C55,C58,C59,C60,C61,C66,C67,C68,C69,C7,C70,C71,C73,C74,C76,C78,C79,C8,C81,C83,C84,C85,C87,C9,D11,D3,D5,D6,D7,D9 |
Chr7:3527806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B30,B34,C3 |
Chr7:3527833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C52,C69,D3 |
Chr7:3527883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B17,B61,B65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772035.1PF00646
F-box 13-54 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772035.1 |
Pfam | PF00646 |
F-box | Domain | 13 | 54 | 1.3e-07 | 31.9 | F-box domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。