当前解析结果
SmilChr07G000505| 统一新 Gene ID | SmilChr07G000505 |
|---|---|
| 名称 | SmilChr07G000505 |
| 描述 | putative F-box protein At3g44060 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3541147 - 3542688 / - |
| NCBI Gene ID | LOC130991696 |
|---|---|
| GeneID | 130991696 |
| locus_tag | - |
| NCBI Name | LOC130991696 |
| 原始查询 | LOC130991696 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative F-box protein At3g44060 |
| 产物 | putative F-box protein At3g44060 |
| Arabidopsis | AT3G44060 (AT3G44060)F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823524] identity=28.9; qcov=0.86; evalue=5.32e-19; confidence=low |
| Rice | Os01g0730200 (OsFbox036)- identity=27.8; qcov=0.694; evalue=1.3e-12; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991696 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772036.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057772036.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057772036.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057772036.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057772036.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3541457 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B47,B50 |
Chr7:3541481 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B117,C39,C74 |
Chr7:3541660 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,B83 |
Chr7:3541685 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,A4,B30,B34,B36 |
Chr7:3541690 |
A |
AC |
1bp_insertion | frameshift_variant | 1 | B47 |
Chr7:3541690 |
A |
AC |
1bp_insertion | CDS_variant | 1 | B47 |
Chr7:3541705 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | B47 |
Chr7:3541705 |
TGA |
T |
2bp_deletion | CDS_variant | 1 | B47 |
Chr7:3541708 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | B47 |
Chr7:3541708 |
C |
CT |
1bp_insertion | CDS_variant | 1 | B47 |
Chr7:3541737 |
CGA |
C |
2bp_deletion | frameshift_variant | 50 | A1,A19,A20,A21,A3,A4,B101,B104,B107,B109,B113,B117,B121,B128,B130,B133,B18,B19,B21,B29,B34,B36,B37,B39,B40,B45,B49,B63,B69,B80,B86,B89,B9,B95,B98,C12,C14,C25,C30,C41,C45,C48,C57,C62,C75,C76,D1,D11,D7,D8 |
Chr7:3541745 |
A |
AAT |
2bp_insertion | frameshift_variant | 60 | A1,A19,A20,A21,A3,A4,A8,B101,B103,B104,B107,B109,B113,B117,B121,B128,B130,B133,B18,B19,B21,B25,B29,B34,B36,B37,B38,B39,B40,B45,B49,B63,B69,B71,B79,B80,B86,B89,B9,B95,B98,C12,C14,C16,C25,C30,C33,C41,C45,C48,C57,C62,C63,C75,C76,D1,D10,D11,D7,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772036.1PF00646
F-box 25-64 aa
PF23622
LRR_At1g61320_AtMIF1 100-287 aa
PF24758
LRR_At5g56370 126-264 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772036.1 |
Pfam | PF00646 |
F-box | Domain | 25 | 64 | 3.1e-07 | 30.7 | F-box domain |
XP_057772036.1 |
Pfam | PF23622 |
LRR_At1g61320_AtMIF1 | Repeat | 100 | 287 | 2e-09 | 38.0 | At1g61320/AtMIF1, LRR domain |
XP_057772036.1 |
Pfam | PF24758 |
LRR_At5g56370 | Repeat | 126 | 264 | 2.1e-13 | 51.2 | FBD-associated F-box protein At5g56370, LRR repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。