Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000537`

染色体: Chr07 坐标: 3716403-3731559 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000537`
名称	SmilChr07G000537
描述	F-box protein At5g03100-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	3716403 - 3731559 / `+`

ID 对照

NCBI Gene ID	`LOC130991725`
GeneID	`130991725`
locus_tag	`-`
NCBI Name	`LOC130991725`
原始查询	`LOC130991725`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box protein At5g03100-like
产物	F-box protein At5g03100-like
Arabidopsis	`AT4G13965` (AT4G13965) F-box/FBD/LRR protein [Source:NCBI gene (formerly Entrezgene);Acc:827031] identity=30.2; qcov=0.646; evalue=3.68e-17; confidence=low
Rice	`Os10g0125300` (OsFbox509) - identity=31.6; qcov=0.496; evalue=1.5e-12; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:130991725

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057772071.1`
2	Cytoplasm	细胞质	0.20000	`XP_057772071.1`
3	Chromosome	染色体	0.00000	`XP_057772071.1`
4	Centromere	着丝粒	0.00000	`XP_057772071.1`
5	Chromatin	染色质	0.00000	`XP_057772071.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:3716435`	`A`	`AAC`	2bp_insertion	frameshift_variant	5	A25,B25,B71,B91,D8
`Chr7:3716435`	`A`	`AAC`	2bp_insertion	CDS_variant	5	A25,B25,B71,B91,D8
`Chr7:3716519`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A6,C4
`Chr7:3716530`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr7:3716558`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B44,C46
`Chr7:3716598`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B22,B87,C17,C79
`Chr7:3716647`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr7:3716792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B78,B8,C19
`Chr7:3716794`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B42,B43,B70
`Chr7:3716808`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B80,C22,C56,D7
`Chr7:3716891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B67,B94
`Chr7:3716919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772071.1

395 aa

198

395

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 15-57 aa PF23622 LRR_At1g61320_AtMIF1 77-367 aa PF24758 LRR_At5g56370 79-187 aa

XP_057772072.1

395 aa

198

395

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 15-57 aa PF23622 LRR_At1g61320_AtMIF1 77-367 aa PF24758 LRR_At5g56370 79-187 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772071.1`	Pfam	`PF00646`	F-box	Domain	15	57	0.00015	22.2	F-box domain
`XP_057772071.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	77	367	5.2e-09	36.7	At1g61320/AtMIF1, LRR domain
`XP_057772071.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	79	187	5.5e-10	40.0	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057772072.1`	Pfam	`PF00646`	F-box	Domain	15	57	0.00015	22.2	F-box domain
`XP_057772072.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	77	367	5.3e-09	36.7	At1g61320/AtMIF1, LRR domain
`XP_057772072.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	79	187	5.5e-10	40.0	FBD-associated F-box protein At5g56370, LRR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916089.1
TTTGAGCCCTAGCTAACTCAAACAATGGATCAATCGCAGGAATCCGAATTAGGCAGCCTCGATCGACTGAGCGACTTACCCGATGCCTTAATTCTTGAGATTCTTTCGTTGTTGCCGTCGTCGATTCGTGATGTAGTTAGGACTACTATTCTCTCGAAACGTTGGAAAGATCTCTGGACCACCGTCCCCCGCTTTGATTTTGATTTTTGTGATGAAGATCCAAACTTTATCCGTGGGGTTCTTGCACAATGGAAAGCCAT...

XM_057916088.1
TTTGAGCCCTAGCTAACTCAAACAATGGATCAATCGCAGGAATCCGAATTAGGCAGCCTCGATCGACTGAGCGACTTACCCGATGCCTTAATTCTTGAGATTCTTTCGTTGTTGCCGTCGTCGATTCGTGATGTAGTTAGGACTACTATTCTCTCGAAACGTTGGAAAGATCTCTGGACCACCGTCCCCCGCTTTGATTTTGATTTTTGTGATGAAGATCCAAACTTTATCCGTGGGGTTCTTGCACAATGGAAAGCCAT...

CDS

2 records

下载 CDS FASTA

LOC130991725
ATGGATCAATCGCAGGAATCCGAATTAGGCAGCCTCGATCGACTGAGCGACTTACCCGATGCCTTAATTCTTGAGATTCTTTCGTTGTTGCCGTCGTCGATTCGTGATGTAGTTAGGACTACTATTCTCTCGAAACGTTGGAAAGATCTCTGGACCACCGTCCCCCGCTTTGATTTTGATTTTTGTGATGAAGATCCAAACTTTATCCGTGGGGTTCTTGCACAATGGAAAGCCATGGAAAAACAAGTGAAGGAGCTAAC...

Protein

2 records

下载 Protein FASTA

XP_057772071.1
MDQSQESELGSLDRLSDLPDALILEILSLLPSSIRDVVRTTILSKRWKDLWTTVPRFDFDFCDEDPNFIRGVLAQWKAMEKQVKELTVQLKPSMSIEYYAPQRLYSCLSLTTLSLSYCSIQIEENVQWNQLRSLTLEHADSVKVSAVTMNRILLAAPRLEQLILRPLEVTEDFYIVSASLKFLEIGLGDYDHSVVYAVLGIWAPNLLLFEFSGDVYGICLLGVPSLTTATLDFIDEPPPLETFYQLLWSIRHVTDLTLSD...

XP_057772072.1
MDQSQESELGSLDRLSDLPDALILEILSLLPSSIRDVVRTTILSKRWKDLWTTVPRFDFDFCDEDPNFIRGVLAQWKAMEKQVKELTVQLKPSMSIEYYAPQRLYSCLSLTTLSLSYCSIQIEENVQWNQLRSLTLEHADSVKVSAVTMNRILLAAPRLEQLILRPLEVTEDFYIVSASLKFLEIGLGDYDHSVVYAVLGIWAPNLLLFEFSGDVYGICLLGVPSLTTATLDFIDEPPPLETFYQLLWSIRHVTDLTLSD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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