当前解析结果
SmilChr07G000553| 统一新 Gene ID | SmilChr07G000553 |
|---|---|
| 名称 | SmilChr07G000553 |
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3811121 - 3814108 / - |
| NCBI Gene ID | LOC130991735 |
|---|---|
| GeneID | 130991735 |
| locus_tag | - |
| NCBI Name | LOC130991735 |
| 原始查询 | LOC130991735 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 产物 | F-box/LRR-repeat protein At3g26922-like |
| Arabidopsis | AT3G52680 (AT3G52680)F-box/RNI-like/FBD-like domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824434] identity=31.1; qcov=0.493; evalue=2.81e-21; confidence=low |
| Rice | Os07g0285200 (OsFbox363)- identity=26.5; qcov=0.5; evalue=2.67e-10; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991735 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772085.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057772085.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057772085.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057772085.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057772085.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3811419 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B81 |
Chr7:3811419 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B81 |
Chr7:3811434 |
AT |
A |
1bp_deletion | frameshift_variant | 47 | A15,A21,A23,A7,B10,B101,B102,B111,B112,B113,B118,B126,B130,B134,B14,B17,B23,B4,B43,B45,B46,B6,B69,B78,B83,B88,C11,C12,C18,C2,C23,C28,C3,C52,C61,C67,C68,C7,C70,C73,C76,C77,C8,C81,C82,C84,D1 |
Chr7:3811468 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B49,C15 |
Chr7:3811483 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,B53 |
Chr7:3811501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:3811525 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr7:3811530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B28,B80,B87,B98 |
Chr7:3811733 |
A |
AC |
1bp_insertion | frameshift_variant | 32 | A13,B103,B118,B140,B21,B28,B37,B39,B53,B61,B68,B71,B76,B80,C13,C2,C27,C29,C41,C42,C5,C50,C60,C64,C66,C7,C76,C8,C86,D4,D5,D9 |
Chr7:3811736 |
AAT |
A |
2bp_deletion | frameshift_variant | 2 | C32,C68 |
Chr7:3811736 |
AAT |
A |
2bp_deletion | CDS_variant | 2 | C32,C68 |
Chr7:3811814 |
CAT |
C |
2bp_deletion | frameshift_variant | 12 | A20,A5,B124,B127,B19,B33,B9,B95,C16,C58,C62,C64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772085.1PF00646
F-box 13-53 aa
XP_057772086.1PF00646
F-box 13-53 aa
XP_057772087.1PF00646
F-box 13-53 aa
XP_057772088.1PF00646
F-box 13-53 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772085.1 |
Pfam | PF00646 |
F-box | Domain | 13 | 53 | 2.1e-07 | 31.3 | F-box domain |
XP_057772086.1 |
Pfam | PF00646 |
F-box | Domain | 13 | 53 | 2.1e-07 | 31.3 | F-box domain |
XP_057772087.1 |
Pfam | PF00646 |
F-box | Domain | 13 | 53 | 2.1e-07 | 31.3 | F-box domain |
XP_057772088.1 |
Pfam | PF00646 |
F-box | Domain | 13 | 53 | 2.1e-07 | 31.3 | F-box domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。