Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000576`

染色体: Chr07 坐标: 3916938-3920151 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000576`
名称	SmilChr07G000576
描述	uncharacterized SmilChr07G000576
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	3916938 - 3920151 / `+`

ID 对照

NCBI Gene ID	`LOC130991751`
GeneID	`130991751`
locus_tag	`-`
NCBI Name	`LOC130991751`
原始查询	`LOC130991751`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os05g0273800; species=rice; confidence=high
产物	hit=Os05g0273800; species=rice; confidence=high
Arabidopsis	`AT4G02340` (AT4G02340) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828063] identity=55.5; qcov=1; evalue=4.43e-133; confidence=high
Rice	`Os05g0273800` - identity=56.4; qcov=1; evalue=9.28e-134; confidence=high
GO	GO:0016787 (hydrolase activity)
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF07224 (Chlorophyllase); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:130991751

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057772114.1`
2	Cytoplasm	细胞质	0.80000	`XP_057772114.1`
3	Nucleus	细胞核	0.00000	`XP_057772114.1`
4	Chromosome	染色体	0.00000	`XP_057772114.1`
5	Centromere	着丝粒	0.00000	`XP_057772114.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:3917199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B63,C71
`Chr7:3917322`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A22,B122,B63,C71,C84
`Chr7:3917395`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr7:3917441`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B42,B43,C45
`Chr7:3918220`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B134,B16,B61
`Chr7:3918253`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,C2
`Chr7:3918254`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B39,C30
`Chr7:3918332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr7:3919000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B69,B74,B90,B92,C17
`Chr7:3919066`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,C47,D3
`Chr7:3919138`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B16,B32,B57
`Chr7:3919211`	`C`	`T`	EMS_canonical_SNV	stop_gained	27	A1,A13,A2,A8,B10,B106,B118,B124,B3,B46,B55,B59,B62,B84,B9,B93,C17,C18,C22,C29,C37,C41,C43,C5,C58,C80,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772114.1

318 aa

159

318

Chlorophyllase

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF07224 Chlorophyllase 9-117 aa PF00561 Abhydrolase_1 26-145 aa PF12146 Hydrolase_4 27-138 aa PF12697 Abhydrolase_6 28-309 aa

XP_057772115.1

318 aa

159

318

Chlorophyllase

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF07224 Chlorophyllase 9-117 aa PF00561 Abhydrolase_1 26-145 aa PF12146 Hydrolase_4 27-138 aa PF12697 Abhydrolase_6 28-309 aa

XP_057772116.1

318 aa

159

318

Chlorophyllase

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF07224 Chlorophyllase 9-117 aa PF00561 Abhydrolase_1 26-145 aa PF12146 Hydrolase_4 27-138 aa PF12697 Abhydrolase_6 28-309 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772114.1`	Pfam	`PF07224`	Chlorophyllase	Family	9	117	2.4e-07	30.6	Chlorophyllase
`XP_057772114.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	26	145	5.2e-20	72.9	alpha/beta hydrolase fold
`XP_057772114.1`	Pfam	`PF12146`	Hydrolase_4	Domain	27	138	6.9e-11	42.6	Serine aminopeptidase, S33
`XP_057772114.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	28	309	6.1e-17	63.7	Alpha/beta hydrolase family
`XP_057772115.1`	Pfam	`PF07224`	Chlorophyllase	Family	9	117	2.4e-07	30.6	Chlorophyllase
`XP_057772115.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	26	145	5.2e-20	72.9	alpha/beta hydrolase fold
`XP_057772115.1`	Pfam	`PF12146`	Hydrolase_4	Domain	27	138	6.9e-11	42.6	Serine aminopeptidase, S33
`XP_057772115.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	28	309	6.1e-17	63.7	Alpha/beta hydrolase family
`XP_057772116.1`	Pfam	`PF07224`	Chlorophyllase	Family	9	117	2.4e-07	30.6	Chlorophyllase
`XP_057772116.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	26	145	5.2e-20	72.9	alpha/beta hydrolase fold
`XP_057772116.1`	Pfam	`PF12146`	Hydrolase_4	Domain	27	138	6.9e-11	42.6	Serine aminopeptidase, S33
`XP_057772116.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	28	309	6.1e-17	63.7	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057916131.1
GGAAAATGAAATATTTACATTAGCAAAAAAAAAAATGAAGCCTTTCTTTGACTTCTACAAGAATTGAGTACCTCATCTCCACCGCCGGCAAAAAAGAAAAATGGAGAAGAAAATACAGCACAAATCCATTCCTGTCAACGGCCTGCAAATGCATGTGGCGGAGGTCGGCGAGGGACCGGTAGTCCTCTTCATCCACGGCTTCCCGGAGCTCTGGTACACGTGGCGGCACCAGATGGCATTCGTGGCGGCGCGCGGCTACC...

XM_057916132.1
GAAATATTTACATTAGCAAAAAAAAAAATGAAGCCTTTCTTTGACTTCTACAAGAATTGAGTACCTCATCTCCACCGCCGGCAAAAAAGAAAAATGGAGAAGAAAATACAGCACAAATCCATTCCTGTCAACGGCCTGCAAATGCATGTGGCGGAGGTCGGCGAGGGACCGGTAGTCCTCTTCATCCACGGCTTCCCGGAGCTCTGGTACACGTGGCGGCACCAGATGGCATTCGTGGCGGCGCGCGGCTACCGCGCCGT...

CDS

3 records

下载 CDS FASTA

LOC130991751
ATGGAGAAGAAAATACAGCACAAATCCATTCCTGTCAACGGCCTGCAAATGCATGTGGCGGAGGTCGGCGAGGGACCGGTAGTCCTCTTCATCCACGGCTTCCCGGAGCTCTGGTACACGTGGCGGCACCAGATGGCATTCGTGGCGGCGCGCGGCTACCGCGCCGTGGCGCCGGATATGAGGGGCTACGGCGACACCACCGGCGCGCCGCTCGAGGACCCGTCGAAGTTCACGCTGATGCACCTGGTGGGCGACCTGAT...

Protein

3 records

下载 Protein FASTA

XP_057772114.1
MEKKIQHKSIPVNGLQMHVAEVGEGPVVLFIHGFPELWYTWRHQMAFVAARGYRAVAPDMRGYGDTTGAPLEDPSKFTLMHLVGDLIALLDAVAPREDKVFVVGHDWGASVAWHLAMFRPDRVRALVNLGVPFTPRNAEMAPVESFRKMYGDDHYICRFQEPGDIEAEFEKVGTKEVLKNMLSFREPAPFFFPKGKGFIYSVDRAPWLTVDDLDYYVSKFEKTGFTGGVNYYRAFGLNLELTAPWSGAGVIVPSKFITGE...

XP_057772115.1
MEKKIQHKSIPVNGLQMHVAEVGEGPVVLFIHGFPELWYTWRHQMAFVAARGYRAVAPDMRGYGDTTGAPLEDPSKFTLMHLVGDLIALLDAVAPREDKVFVVGHDWGASVAWHLAMFRPDRVRALVNLGVPFTPRNAEMAPVESFRKMYGDDHYICRFQEPGDIEAEFEKVGTKEVLKNMLSFREPAPFFFPKGKGFIYSVDRAPWLTVDDLDYYVSKFEKTGFTGGVNYYRAFGLNLELTAPWSGAGVIVPSKFITGE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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