当前解析结果
SmilChr01G003293| 统一新 Gene ID | SmilChr01G003293 |
|---|---|
| 名称 | SmilChr01G003293 |
| 描述 | ABC transporter C family member 8-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 51622951 - 51629226 / + |
| NCBI Gene ID | LOC130991752 |
|---|---|
| GeneID | 130991752 |
| locus_tag | - |
| NCBI Name | LOC130991752 |
| 原始查询 | LOC130991752 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter C family member 8-like |
| 产物 | ABC transporter C family member 8-like |
| Arabidopsis | AT3G21250 (ABCC8)multidrug resistance-associated protein 6 [Source:NCBI gene (formerly Entrezgene);Acc:821679] identity=58.3; qcov=0.995; evalue=0; confidence=high |
| Rice | Os05g0196100 (OsABCC14)- identity=54.8; qcov=0.912; evalue=0; confidence=high |
| GO | GO:0000325 (plant-type vacuole); GO:0005524 (ATP binding); GO:0005774 (vacuolar membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991752 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057772119.1 |
| 2 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057772119.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772119.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772119.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772119.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:51623480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr1:51623544 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B113,B124,C40,C65 |
Chr1:51623599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:51623616 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:51623706 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,B137 |
Chr1:51623750 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr1:51624017 |
AGT |
A |
2bp_deletion | frameshift_variant | 2 | B94,C80 |
Chr1:51624017 |
AGT |
A |
2bp_deletion | CDS_variant | 2 | B94,C80 |
Chr1:51624020 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,B137 |
Chr1:51624101 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr1:51624313 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A14,B28,B59,C38,C75 |
Chr1:51624320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772119.1PF00664
ABC_membrane 283-551 aa
PF00005
ABC_tran 617-751 aa
PF00664
ABC_membrane 902-1166 aa
PF00005
ABC_tran 1233-1381 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772119.1 |
Pfam | PF00664 |
ABC_membrane | Family | 283 | 551 | 3.1e-46 | 159.0 | ABC transporter transmembrane region |
XP_057772119.1 |
Pfam | PF00005 |
ABC_tran | Domain | 617 | 751 | 8.8e-49 | 166.3 | ABC transporter |
XP_057772119.1 |
Pfam | PF00664 |
ABC_membrane | Family | 902 | 1166 | 3.1e-46 | 159.0 | ABC transporter transmembrane region |
XP_057772119.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1233 | 1381 | 8.8e-49 | 166.3 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。