当前解析结果
SmilChr07G000699| 统一新 Gene ID | SmilChr07G000699 |
|---|---|
| 名称 | SmilChr07G000699 |
| 描述 | myosin-8-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4802241 - 4818461 / - |
| NCBI Gene ID | LOC130991754 |
|---|---|
| GeneID | 130991754 |
| locus_tag | - |
| NCBI Name | LOC130991754 |
| 原始查询 | LOC130991754 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | myosin-8-like |
| 产物 | myosin-8-like |
| Arabidopsis | AT1G04160 (XIB)myosin XI B [Source:NCBI gene (formerly Entrezgene);Acc:839246] identity=63; qcov=1.02; evalue=0; confidence=high |
| Rice | Os02g0816900 (OSMYOXIB)- identity=63.9; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0000146 (microfilament motor activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0007015 (actin filament organization); GO:0015629 (actin cytoskeleton); GO:0016459 (myosin complex); GO:0030050 (vesicle transport along actin filament); GO:0031982 (vesicle); GO:0051015 (actin filament binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00063 (Myosin_head); PF00612 (IQ); PF01843 (DIL); PF02736 (Myosin_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991754 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057772117.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057772117.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057772117.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057772117.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057772117.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4803549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr7:4804257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B87,C32,C48,C68 |
Chr7:4804328 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr7:4804331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr7:4805104 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:4805108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B68,C17,C46 |
Chr7:4805179 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr7:4805182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B87,C32,C68 |
Chr7:4805516 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B109 |
Chr7:4805516 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B109 |
Chr7:4805518 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B109 |
Chr7:4805518 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B109 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772117.1PF02736
Myosin_N 7-55 aa
PF00063
Myosin_head 64-721 aa
PF00612
IQ 760-779 aa
PF00612
IQ 786-804 aa
PF00612
IQ 835-852 aa
PF01843
DIL 1361-1464 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772117.1 |
Pfam | PF02736 |
Myosin_N | Domain | 7 | 55 | 3.4e-09 | 36.9 | Myosin N-terminal SH3-like domain |
XP_057772117.1 |
Pfam | PF00063 |
Myosin_head | Domain | 64 | 721 | 8.6e-259 | 861.1 | Myosin head (motor domain) |
XP_057772117.1 |
Pfam | PF00612 |
IQ | Motif | 760 | 779 | 7.3e-17 | 60.2 | IQ calmodulin-binding motif |
XP_057772117.1 |
Pfam | PF00612 |
IQ | Motif | 786 | 804 | 7.3e-17 | 60.2 | IQ calmodulin-binding motif |
XP_057772117.1 |
Pfam | PF00612 |
IQ | Motif | 835 | 852 | 7.3e-17 | 60.2 | IQ calmodulin-binding motif |
XP_057772117.1 |
Pfam | PF01843 |
DIL | Repeat | 1361 | 1464 | 2.6e-24 | 86.1 | DIL domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。