Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000595`

染色体: Chr07 坐标: 4060608-4066242 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000595`
名称	SmilChr07G000595
描述	uncharacterized SmilChr07G000595
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4060608 - 4066242 / `-`

ID 对照

NCBI Gene ID	`LOC130991757`
GeneID	`130991757`
locus_tag	`-`
NCBI Name	`LOC130991757`
原始查询	`LOC130991757`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	binding protein [Source:NCBI gene (formerly Entrezgene);Acc:827271]; symbol=AT4G15890; hit=AT4G15890; species=arabidopsis; confidence=high
产物	binding protein [Source:NCBI gene (formerly Entrezgene);Acc:827271]; symbol=AT4G15890; hit=AT4G15890; species=arabidopsis; confidence=high
Arabidopsis	`AT4G15890` (AT4G15890) binding protein [Source:NCBI gene (formerly Entrezgene);Acc:827271] identity=56.3; qcov=1.02; evalue=0; confidence=high
Rice	`Os12g0548100` - identity=51.5; qcov=0.874; evalue=0; confidence=high
GO	GO:0000779 (condensed chromosome, centromeric region); GO:0007076 (mitotic chromosome condensation); GO:0010032 (meiotic chromosome condensation); GO:0042393 (histone binding)
KEGG	-
Pfam	PF12717 (Cnd1); PF26778 (HEAT_NCAPD3); PF26779 (HEAT_NCAPD3_2)
InterPro	-
eggNOG	-
NR	GeneID:130991757

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057772121.1`
2	Chromosome	染色体	0.20000	`XP_057772121.1`
3	Centromere	着丝粒	0.00000	`XP_057772121.1`
4	Chromatin	染色质	0.00000	`XP_057772121.1`
5	Telomere	端粒	0.00000	`XP_057772121.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4060838`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr7:4060979`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:4060996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B60,B77,C49,C6
`Chr7:4061069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B55,B93
`Chr7:4061111`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr7:4061144`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B109,B2,B40
`Chr7:4061183`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,B95
`Chr7:4061342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:4061794`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:4062209`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B57,B91
`Chr7:4062396`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B75,B95
`Chr7:4062420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B28,B80,B87,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772121.1

1329 aa

664

1329

HEAT_NCAPD3

Cnd1

HEAT_NCAPD3_2

PF26778 HEAT_NCAPD3 807-892 aa PF12717 Cnd1 899-1074 aa PF26779 HEAT_NCAPD3_2 1098-1211 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772121.1`	Pfam	`PF26778`	HEAT_NCAPD3	Repeat	807	892	5.2e-19	69.5	Condensin-2 complex subunit D3-like. HEAT repeats
`XP_057772121.1`	Pfam	`PF12717`	Cnd1	Repeat	899	1074	1.4e-27	97.5	non-SMC mitotic condensation complex subunit 1
`XP_057772121.1`	Pfam	`PF26779`	HEAT_NCAPD3_2	Repeat	1098	1211	6.1e-36	123.7	Condensin-2 complex subunit D3-like. HEAT repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916138.1
CCATCTTCAACAAATATTCACAAACCTCTCAATTTTGAAGCGGGAAATGTGAAAATTCAAAGCCTTCTGCATTAACGCCCACGGCGGTGAAGAATCGTTCAACATTTCGCCATGGATGAAGTGATAGCTCGAGTAGTTGCAGATCTCGAAGCTCAATCACCAATTTCACAATCCTTTCTCAGAGATTTAGACACCCTCTTGGATTTCACTCTCAAGACCAACGACACAATCGACATCGAGAATTTCTACAATGAACTTTC...

CDS

1 records

下载 CDS FASTA

LOC130991757
ATGGATGAAGTGATAGCTCGAGTAGTTGCAGATCTCGAAGCTCAATCACCAATTTCACAATCCTTTCTCAGAGATTTAGACACCCTCTTGGATTTCACTCTCAAGACCAACGACACAATCGACATCGAGAATTTCTACAATGAACTTTCTTCAAGAAACCTCTCCCTCAATTCACTCACAAATGCCATTTCCACAGCCATGGATTCAGGCGTTAGCTCCAGCAATTCAGTTCTGGCATCAAAGGTGTATCTCTCGCTGTT...

Protein

1 records

下载 Protein FASTA

XP_057772121.1
MDEVIARVVADLEAQSPISQSFLRDLDTLLDFTLKTNDTIDIENFYNELSSRNLSLNSLTNAISTAMDSGVSSSNSVLASKVYLSLLLSPNSPVFTLFTPMAFLSLLRVIRLAVKNPSSAPREGSASRSAGAKKKGKRKNGGNQARVEIRDFVENEGEERSYDVKDLFFLIEKLEMVMGLIHLDRFPDCLKALVQTVTEIPMTAADSWDLGSFRRLCELCSRILSEALRGEHGDLGGTAAEVLKALRPLILLPKCQVRSF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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