当前解析结果
SmilChr07G000762| 统一新 Gene ID | SmilChr07G000762 |
|---|---|
| 名称 | SmilChr07G000762 |
| 描述 | putative disease resistance protein RGA1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 5349771 - 5355470 / - |
| NCBI Gene ID | LOC130991761 |
|---|---|
| GeneID | 130991761 |
| locus_tag | - |
| NCBI Name | LOC130991761 |
| 原始查询 | LOC130991761 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein RGA1 |
| 产物 | putative disease resistance protein RGA1 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=29.9; qcov=0.897; evalue=5.99e-105; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=30.3; qcov=0.879; evalue=4.81e-116; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991761 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057772126.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057772126.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772126.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772126.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772126.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:5350065 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr7:5351800 |
ATT |
A |
2bp_deletion | frameshift_variant | 4 | A1,B38,B39,B5 |
Chr7:5351800 |
ATT |
A |
2bp_deletion | CDS_variant | 4 | A1,B38,B39,B5 |
Chr7:5351814 |
A |
AC |
1bp_insertion | frameshift_variant | 3 | B67,B9,C12 |
Chr7:5351814 |
A |
AC |
1bp_insertion | CDS_variant | 3 | B67,B9,C12 |
Chr7:5351824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B42,B43,B71,B85,C65 |
Chr7:5351872 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B65,C35 |
Chr7:5351884 |
CA |
C |
1bp_deletion | frameshift_variant | 10 | A2,B111,B131,B21,B56,B72,B78,B86,C10,C64 |
Chr7:5351928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr7:5351967 |
C |
T |
EMS_canonical_SNV | stop_gained | 116 | A10,A13,A14,A15,A16,A20,A21,A23,A24,A25,A3,A5,A7,A8,B101,B102,B103,B106,B108,B11,B110,B111,B112,B113,B114,B115,B117,B119,B122,B123,B124,B126,B131,B134,B135,B139,B14,B140,B15,B17,B20,B22,B23,B31,B34,B35,B40,B42,B43,B44,B46,B48,B51,B6,B65,B66,B68,B70,B76,B77,B8,B83,B84,B85,B86,B90,B91,B93,B94,B97,C1,C17,C21,C22,C29,C3,C33,C34,C35,C36,C38,C39,C44,C47,C5,C51,C53,C54,C55,C56,C57,C6,C60,C62,C63,C64,C67,C70,C71,C72,C73,C74,C76,C77,C79,C8,C83,C86,C87,D1,D11,D3,D4,D5,D6,D8 |
Chr7:5351977 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr7:5351984 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B18,B3,B47,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772126.1PF18052
Rx_N 36-123 aa
PF00931
NB-ARC 201-393 aa
PF23559
WHD_DRP 477-548 aa
PF23598
LRR_14 598-865 aa
PF25019
LRR_R13L1-DRL21 710-846 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772126.1 |
Pfam | PF18052 |
Rx_N | Domain | 36 | 123 | 2.6e-21 | 76.2 | Rx N-terminal domain |
XP_057772126.1 |
Pfam | PF00931 |
NB-ARC | Domain | 201 | 393 | 2.9e-32 | 112.3 | NB-ARC domain |
XP_057772126.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 477 | 548 | 2e-24 | 86.1 | Disease resistance protein Winged helix domain |
XP_057772126.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 598 | 865 | 1e-30 | 107.4 | Leucine-rich repeat region |
XP_057772126.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 710 | 846 | 1.6e-46 | 158.0 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。