Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003294`

染色体: Chr01 坐标: 51635576-51642970 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003294`
名称	SmilChr01G003294
描述	ABC transporter C family member 8-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	51635576 - 51642970 / `+`

ID 对照

NCBI Gene ID	`LOC130991762`
GeneID	`130991762`
locus_tag	`-`
NCBI Name	`LOC130991762`
原始查询	`LOC130991762`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter C family member 8-like
产物	ABC transporter C family member 8-like
Arabidopsis	`AT3G21250` (ABCC8) multidrug resistance-associated protein 6 [Source:NCBI gene (formerly Entrezgene);Acc:821679] identity=60; qcov=0.991; evalue=0; confidence=high
Rice	`Os05g0196100` (OsABCC14) - identity=55.9; qcov=0.909; evalue=0; confidence=high
GO	GO:0000325 (plant-type vacuole); GO:0005524 (ATP binding); GO:0005774 (vacuolar membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity)
KEGG	-
Pfam	PF00005 (ABC_tran); PF00664 (ABC_membrane)
InterPro	-
eggNOG	-
NR	GeneID:130991762

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057772130.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057772130.1`
3	Nucleus	细胞核	0.00000	`XP_057772130.1`
4	Chromosome	染色体	0.00000	`XP_057772130.1`
5	Centromere	着丝粒	0.00000	`XP_057772130.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:51636190`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr1:51636217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr1:51636309`	`GA`	`G`	1bp_deletion	frameshift_variant	1	D10
`Chr1:51636309`	`GA`	`G`	1bp_deletion	CDS_variant	1	D10
`Chr1:51636327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B14,C28,C31
`Chr1:51636845`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C52,D10
`Chr1:51637044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B117,B47,C25,C65
`Chr1:51637224`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C62
`Chr1:51637224`	`TC`	`T`	1bp_deletion	CDS_variant	1	C62
`Chr1:51637227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr1:51637244`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B71,C61,C62,D10,D5
`Chr1:51637247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772130.1

1459 aa

730

1459

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 284-551 aa PF00005 ABC_tran 617-751 aa PF00664 ABC_membrane 900-1165 aa PF00005 ABC_tran 1233-1381 aa

XP_057772138.1

1459 aa

730

1459

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 284-551 aa PF00005 ABC_tran 617-751 aa PF00664 ABC_membrane 900-1165 aa PF00005 ABC_tran 1233-1381 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772130.1`	Pfam	`PF00664`	ABC_membrane	Family	284	551	2.6e-48	165.8	ABC transporter transmembrane region
`XP_057772130.1`	Pfam	`PF00005`	ABC_tran	Domain	617	751	6.5e-48	163.5	ABC transporter
`XP_057772130.1`	Pfam	`PF00664`	ABC_membrane	Family	900	1165	2.6e-48	165.8	ABC transporter transmembrane region
`XP_057772130.1`	Pfam	`PF00005`	ABC_tran	Domain	1233	1381	6.5e-48	163.5	ABC transporter
`XP_057772138.1`	Pfam	`PF00664`	ABC_membrane	Family	284	551	2.6e-48	165.8	ABC transporter transmembrane region
`XP_057772138.1`	Pfam	`PF00005`	ABC_tran	Domain	617	751	6.5e-48	163.5	ABC transporter
`XP_057772138.1`	Pfam	`PF00664`	ABC_membrane	Family	900	1165	2.6e-48	165.8	ABC transporter transmembrane region
`XP_057772138.1`	Pfam	`PF00005`	ABC_tran	Domain	1233	1381	6.5e-48	163.5	ABC transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916155.1
ATTTATACTCCGAAATCCTTCGTCAAATTATCTTCTCAAATTTCCTTTAATTTAATTTCGACCATAATTTTTGTACACAGTTTTCTATGCACCTCACATCTGCAATCAAATCAGTGGAAAGTAGCCAATTCTCATTTGTTCACTGCATTCTGCATATATAAATATAGCCCTTTATCTACAATTTGTGTGATGTAAAAAAAAGAAAAACTTCAAAACAATGGCATCCTCAATTGCTTTGTGGCGGGAAATTTCTTGGTTGC...

XM_057916147.1
ATTTATACTCCGAAATCCTTCGTCAAATTATCTTCTCAAATTTCCTTTAATTTAATTTCGACCATAATTTTTGTACACAGTTTTCTATGCACCTCACATCTGCAATCAAATCAGTGGAAAGTAGCCAATTCTCATTTGTTCACTGCATTCTGCATATATAAATATAGCCCTTTATCTACAATTTGTGTGATGTAAAAAAAAGAAAAACTTCAAAACAATGGCATCCTCAATTGCTTTGTGGCGGGAAATTTCTTGGTTGC...

CDS

2 records

下载 CDS FASTA

LOC130991762
ATGGCATCCTCAATTGCTTTGTGGCGGGAAATTTCTTGGTTGCATGGAGAAATTATTGACAGGGGATTGTCTTCTTCTTTGAGAATCATCATTGATTACTTGAATCTATTGGTTGCCTTTGTCTTTTATGTGGTTTTACTTGTTACAAAGAGAAGTAGATTTAGAGAGAGAAGAAGAGATTGGTTTAACATAGCAATTTTAGGTGGCTGTGCTCTTGTGAGCATAGAATACTATGGGGCTGCTATATATAGTAGTTTGAT...

Protein

2 records

下载 Protein FASTA

XP_057772130.1
MASSIALWREISWLHGEIIDRGLSSSLRIIIDYLNLLVAFVFYVVLLVTKRSRFRERRRDWFNIAILGGCALVSIEYYGAAIYSSLISEGEESSRFSWLVSFGRGLIWTTLAISVIVRGPRLVAVLKSAWWIVFFLLISALNILDLVKSGHIQILEVAPWLVNLFLLFCGLKNLRGIVSQPVLGSSFSESLLVKTLEKDRVDLDEASLLSILLFSWINPLLRLGHSRTLNLNDVPSLGSEDEALLAYKNFGDAWSVLKEE...

XP_057772138.1
MASSIALWREISWLHGEIIDRGLSSSLRIIIDYLNLLVAFVFYVVLLVTKRSRFRERRRDWFNIAILGGCALVSIEYYGAAIYSSLISEGEESSRFSWLVSFGRGLIWTTLAISVIVRGPRLVAVLKSAWWIVFFLLISALNILDLVKSGHIQILEVAPWLVNLFLLFCGLKNLRGIVSQPVLGSSFSESLLVKTLEKDRVDLDEASLLSILLFSWINPLLRLGHSRTLNLNDVPSLGSEDEALLAYKNFGDAWSVLKEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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