当前解析结果
SmilChr07G000767| 统一新 Gene ID | SmilChr07G000767 |
|---|---|
| 名称 | SmilChr07G000767 |
| 描述 | disease resistance protein RGA2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 5373418 - 5377930 / + |
| NCBI Gene ID | LOC130991763 |
|---|---|
| GeneID | 130991763 |
| locus_tag | - |
| NCBI Name | LOC130991763 |
| 原始查询 | LOC130991763 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RGA2-like |
| 产物 | disease resistance protein RGA2-like |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=30.1; qcov=0.91; evalue=1.45e-109; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=30.3; qcov=0.887; evalue=5.13e-113; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991763 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057772127.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057772127.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772127.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772127.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772127.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:5373638 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C71 |
Chr7:5373638 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr7:5373749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,B25,C20 |
Chr7:5373758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B80,D5 |
Chr7:5373772 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B52,C3,C55 |
Chr7:5373799 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B25,B69,B81,B85,C51 |
Chr7:5373817 |
C |
CG |
1bp_insertion | frameshift_variant | 4 | B107,B14,B32,C19 |
Chr7:5373817 |
C |
CG |
1bp_insertion | CDS_variant | 4 | B107,B14,B32,C19 |
Chr7:5373827 |
GT |
G |
1bp_deletion | frameshift_variant | 9 | B11,B12,B2,B39,B78,C5,C57,C71,C82 |
Chr7:5373856 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B121,B69,B85,C13,C59 |
Chr7:5373949 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,C8 |
Chr7:5373951 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772127.1PF18052
Rx_N 10-97 aa
PF00931
NB-ARC 172-364 aa
PF23559
WHD_DRP 445-516 aa
PF23598
LRR_14 550-772 aa
PF25019
LRR_R13L1-DRL21 680-816 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772127.1 |
Pfam | PF18052 |
Rx_N | Domain | 10 | 97 | 9.4e-22 | 77.7 | Rx N-terminal domain |
XP_057772127.1 |
Pfam | PF00931 |
NB-ARC | Domain | 172 | 364 | 5e-33 | 114.8 | NB-ARC domain |
XP_057772127.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 445 | 516 | 4.4e-25 | 88.2 | Disease resistance protein Winged helix domain |
XP_057772127.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 550 | 772 | 2.9e-33 | 115.8 | Leucine-rich repeat region |
XP_057772127.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 680 | 816 | 2.7e-47 | 160.5 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。