当前解析结果
SmilChr07G000711| 统一新 Gene ID | SmilChr07G000711 |
|---|---|
| 名称 | SmilChr07G000711 |
| 描述 | disease resistance protein RGA2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4950344 - 4956140 / + |
| NCBI Gene ID | LOC130991764 |
|---|---|
| GeneID | 130991764 |
| locus_tag | - |
| NCBI Name | LOC130991764 |
| 原始查询 | LOC130991764 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RGA2-like |
| 产物 | disease resistance protein RGA2-like |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=28.9; qcov=0.915; evalue=2.46e-98; confidence=low |
| Rice | Os08g0543100- identity=29.5; qcov=1.04; evalue=1.01e-104; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991764 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057772128.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057772128.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772128.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772128.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772128.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4951998 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr7:4952045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr7:4952054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr7:4952074 |
CCA |
C |
2bp_deletion | frameshift_variant | 1 | B91 |
Chr7:4952074 |
CCA |
C |
2bp_deletion | CDS_variant | 1 | B91 |
Chr7:4952098 |
TGA |
T |
2bp_deletion | frameshift_variant | 3 | B105,B2,B40 |
Chr7:4952098 |
TGA |
T |
2bp_deletion | CDS_variant | 3 | B105,B2,B40 |
Chr7:4952102 |
G |
GAA |
2bp_insertion | frameshift_variant | 2 | B105,B2 |
Chr7:4952102 |
G |
GAA |
2bp_insertion | CDS_variant | 2 | B105,B2 |
Chr7:4952115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr7:4952124 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B2,B69,B91 |
Chr7:4952152 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,B91 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772128.1PF18052
Rx_N 9-93 aa
PF00931
NB-ARC 169-348 aa
PF23559
WHD_DRP 425-496 aa
PF23598
LRR_14 529-824 aa
PF25019
LRR_R13L1-DRL21 651-794 aa
PF23247
LRR_RPS2 823-953 aa
PF25019
LRR_R13L1-DRL21 1052-1111 aa
XP_057772129.1PF18052
Rx_N 9-93 aa
PF00931
NB-ARC 169-348 aa
PF23559
WHD_DRP 425-496 aa
PF23598
LRR_14 529-824 aa
PF25019
LRR_R13L1-DRL21 651-794 aa
PF23247
LRR_RPS2 823-953 aa
PF25019
LRR_R13L1-DRL21 1052-1111 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772128.1 |
Pfam | PF18052 |
Rx_N | Domain | 9 | 93 | 1.9e-17 | 63.9 | Rx N-terminal domain |
XP_057772128.1 |
Pfam | PF00931 |
NB-ARC | Domain | 169 | 348 | 5e-28 | 98.5 | NB-ARC domain |
XP_057772128.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 425 | 496 | 3.6e-25 | 88.5 | Disease resistance protein Winged helix domain |
XP_057772128.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 529 | 824 | 6.3e-47 | 160.8 | Leucine-rich repeat region |
XP_057772128.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 651 | 794 | 1.1e-49 | 168.2 | R13L1/DRL21 LRRs |
XP_057772128.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 823 | 953 | 2e-12 | 48.0 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
XP_057772128.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 1052 | 1111 | 1.1e-49 | 168.2 | R13L1/DRL21 LRRs |
XP_057772129.1 |
Pfam | PF18052 |
Rx_N | Domain | 9 | 93 | 1.9e-17 | 63.9 | Rx N-terminal domain |
XP_057772129.1 |
Pfam | PF00931 |
NB-ARC | Domain | 169 | 348 | 5e-28 | 98.5 | NB-ARC domain |
XP_057772129.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 425 | 496 | 3.6e-25 | 88.5 | Disease resistance protein Winged helix domain |
XP_057772129.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 529 | 824 | 6.3e-47 | 160.8 | Leucine-rich repeat region |
XP_057772129.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 651 | 794 | 1.1e-49 | 168.2 | R13L1/DRL21 LRRs |
XP_057772129.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 823 | 953 | 2e-12 | 48.0 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
XP_057772129.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 1052 | 1111 | 1.1e-49 | 168.2 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。