Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000609`

染色体: Chr07 坐标: 4141032-4145894 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000609`
名称	SmilChr07G000609
描述	putative late blight resistance protein homolog R1A-10
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4141032 - 4145894 / `+`

ID 对照

NCBI Gene ID	`LOC130991768`
GeneID	`130991768`
locus_tag	`-`
NCBI Name	`LOC130991768`
原始查询	`LOC130991768`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-10
产物	putative late blight resistance protein homolog R1A-10
Arabidopsis	`AT3G46530` (RPP13) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=34.3; qcov=0.602; evalue=1.85e-71; confidence=low
Rice	`Os07g0186500` - identity=29; qcov=0.984; evalue=1.74e-75; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130991768

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057772136.1`
2	Cell membrane	细胞膜	0.40000	`XP_057772136.1`
3	Cytoplasm	细胞质	0.20000	`XP_057772136.1`
4	Nucleus	细胞核	0.00000	`XP_057772136.1`
5	Chromosome	染色体	0.00000	`XP_057772136.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4141678`	`ATC`	`A`	2bp_deletion	frameshift_variant	38	A15,A18,A19,A3,B100,B11,B129,B137,B138,B15,B20,B25,B33,B39,B42,B43,B44,B55,B64,B79,B8,B81,B93,B94,B99,C17,C2,C39,C57,C6,C73,C74,C80,C87,D10,D11,D2,D3
`Chr7:4141687`	`GAT`	`G`	2bp_deletion	frameshift_variant	20	A15,A18,A19,B11,B119,B15,B20,B39,B55,B79,B81,B94,B99,C11,C17,C57,C71,C73,C74,D2
`Chr7:4141727`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B136
`Chr7:4141727`	`CA`	`C`	1bp_deletion	CDS_variant	1	B136
`Chr7:4141845`	`AG`	`A`	1bp_deletion	frameshift_variant	8	B123,B132,B14,B80,B95,C3,C34,C49
`Chr7:4141848`	`T`	`TG`	1bp_insertion	frameshift_variant	8	B123,B132,B14,B80,B95,C3,C34,C49
`Chr7:4141869`	`GTC`	`G`	2bp_deletion	frameshift_variant	34	A1,A10,A15,A18,A19,B102,B11,B110,B117,B119,B140,B15,B20,B21,B23,B24,B38,B55,B60,B61,B66,B68,B75,B81,C11,C17,C2,C29,C4,C7,C72,C83,C84,C86
`Chr7:4141902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr7:4141903`	`AG`	`A`	1bp_deletion	frameshift_variant	10	A9,B50,B57,B77,C44,C49,C53,C6,C64,C66
`Chr7:4141928`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B15,C72,C79,D6
`Chr7:4141934`	`TCC`	`T`	2bp_deletion	frameshift_variant	23	A18,A7,B10,B107,B117,B127,B19,B30,B36,B49,B62,B69,B85,B97,C21,C24,C34,C46,C5,C84,C9,D6,D7
`Chr7:4141939`	`A`	`ATG`	2bp_insertion	stop_gained,frameshift_variant	23	A18,A7,B10,B107,B117,B127,B19,B30,B36,B49,B62,B69,B7,B97,C21,C24,C34,C46,C5,C84,C9,D6,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772136.1

886 aa

443

886

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 148-316 aa PF23559 WHD_DRP 401-471 aa PF23598 LRR_14 540-828 aa

XP_057772137.1

854 aa

427

854

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 148-316 aa PF23559 WHD_DRP 401-471 aa PF23598 LRR_14 540-828 aa

XP_057772139.1

852 aa

426

852

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 148-316 aa PF23559 WHD_DRP 401-471 aa PF23598 LRR_14 540-828 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772136.1`	Pfam	`PF00931`	NB-ARC	Domain	148	316	8.5e-44	149.9	NB-ARC domain
`XP_057772136.1`	Pfam	`PF23559`	WHD_DRP	Domain	401	471	2e-20	73.3	Disease resistance protein Winged helix domain
`XP_057772136.1`	Pfam	`PF23598`	LRR_14	Repeat	540	828	3.4e-15	56.4	Leucine-rich repeat region
`XP_057772137.1`	Pfam	`PF00931`	NB-ARC	Domain	148	316	7.9e-44	150.0	NB-ARC domain
`XP_057772137.1`	Pfam	`PF23559`	WHD_DRP	Domain	401	471	1.9e-20	73.4	Disease resistance protein Winged helix domain
`XP_057772137.1`	Pfam	`PF23598`	LRR_14	Repeat	540	828	3.1e-15	56.5	Leucine-rich repeat region
`XP_057772139.1`	Pfam	`PF00931`	NB-ARC	Domain	148	316	8e-44	150.0	NB-ARC domain
`XP_057772139.1`	Pfam	`PF23559`	WHD_DRP	Domain	401	471	1.9e-20	73.4	Disease resistance protein Winged helix domain
`XP_057772139.1`	Pfam	`PF23598`	LRR_14	Repeat	540	828	3.1e-15	56.5	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057916153.1
ATAAGGTAATTCTGGACTACTCTTTTTCATTGAACCGCCAAGCCAACTATGGAAAATTTGAAAACTAAAATAAACAATAATAAAATTTGGGAGGTGATCAATTAATTGAAAGCTAATAGTTGGGGGTCAAAATTGAAAGATATCATCACCTGAATAAAATAATAAATCCCTAAACCCCCATTTCTCTTGGGCAGTGCATCAATTGTACGCTATGGATAAATCAATAAACCTCCAACACTTGTTTCAAGACCTTAATGGTT...

XM_057916154.1
TAAGGTAATTCTGGACTACTCTTTTTCATTGAACCGCCAAGCCAACTATGGAAAATTTGAAAACTAAAATAAACAATAATAAAATTTGGGAGGTGATCAATTAATTGAAAGCTAATAGTTGGGGGTCAAAATTGAAAGATATCATCACCTGAATAAAATAATAAATCCCTAAACCCCCATTTCTCTTGGGCAGTGCATCAATTGTACGCTATGGATAAATCAATAAACCTCCAACACTTGTTTCAAGACCTTAATGGTTG...

CDS

3 records

下载 CDS FASTA

LOC130991768
ATGGCCTACAATCTTCAACCCCTCATCACCATCCTACAACAAATCTTGAATCCTGAACAATCACACTGGATTGTTGATCACAACAAACCACAACTCCAATCCCTCCTCCAAAAAGCTGCTTCTCTGCAGCAGATTCTTGAAAATTCTTCACTCCCCAAAAACATAGAAAGTTTGGAGAACCAAATCCGAGATGCAGCACATCAAGCAGAAGACATCATTGAATCTCAGATGGTTGATCAAATCCTTTCCAGTCCAGAAGG...

Protein

3 records

下载 Protein FASTA

XP_057772136.1
MAYNLQPLITILQQILNPEQSHWIVDHNKPQLQSLLQKAASLQQILENSSLPKNIESLENQIRDAAHQAEDIIESQMVDQILSSPEGERFTFSTPDLQQVIQQLDSAMEQVVKLAKGKTMPSGSSSSGATLLQDPSSKSVVVGVDDALFQLKDRLTGMQSKLEILPIVGMGGIGKTTLARKLYQDPLIVEHFSYIAWVTISQDYNMRAILLGLIRCIIGKECDQHKEKGDGELKDILYQSLYGRRYMIVLDDIWSTKFWD...

XP_057772137.1
MAYNLQPLITILQQILNPEQSHWIVDHNKPQLQSLLQKAASLQQILENSSLPKNIESLENQIRDAAHQAEDIIESQMVDQILSSPEGERFTFSTPDLQQVIQQLDSAMEQVVKLAKGKTMPSGSSSSGATLLQDPSSKSVVVGVDDALFQLKDRLTGMQSKLEILPIVGMGGIGKTTLARKLYQDPLIVEHFSYIAWVTISQDYNMRAILLGLIRCIIGKECDQHKEKGDGELKDILYQSLYGRRYMIVLDDIWSTKFWD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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