当前解析结果
SmilChr07G000708| 统一新 Gene ID | SmilChr07G000708 |
|---|---|
| 名称 | SmilChr07G000708 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4928860 - 4936188 / + |
| NCBI Gene ID | LOC130991773 |
|---|---|
| GeneID | 130991773 |
| locus_tag | - |
| NCBI Name | LOC130991773 |
| 原始查询 | LOC130991773 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT5G48620 (AT5G48620)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834919] identity=28.3; qcov=1.05; evalue=3.89e-89; confidence=low |
| Rice | Os12g0564800- identity=29.3; qcov=0.826; evalue=1.35e-73; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991773 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057772147.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057772147.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057772147.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057772147.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057772147.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4929206 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B114,B33,B93 |
Chr7:4929245 |
A |
AGG |
2bp_insertion | frameshift_variant | 45 | A1,A22,A6,A7,A9,B101,B108,B120,B132,B139,B3,B30,B31,B36,B4,B42,B47,B48,B5,B55,B58,B61,B65,B74,B75,B76,B88,B9,B90,B92,C21,C23,C24,C28,C31,C34,C35,C37,C40,C43,C45,C5,C63,C7,C87 |
Chr7:4929246 |
TAC |
T |
2bp_deletion | frameshift_variant | 44 | A1,A22,A6,A7,A9,B101,B108,B120,B132,B3,B30,B31,B36,B4,B42,B47,B48,B5,B55,B58,B61,B65,B74,B75,B76,B88,B9,B90,B92,C21,C23,C24,C28,C31,C34,C35,C37,C40,C43,C45,C5,C63,C7,C87 |
Chr7:4929286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,C82 |
Chr7:4929297 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C2,C37,C60 |
Chr7:4929299 |
ATC |
A |
2bp_deletion | frameshift_variant | 1 | C82 |
Chr7:4929299 |
ATC |
A |
2bp_deletion | CDS_variant | 1 | C82 |
Chr7:4929313 |
C |
CT |
1bp_insertion | frameshift_variant | 20 | B113,B14,B19,B26,B27,B42,B43,B52,B58,B60,B70,B98,C18,C41,C46,C48,C52,C55,C75,D5 |
Chr7:4929314 |
T |
TC |
1bp_insertion | frameshift_variant | 39 | A13,A6,A7,A9,B101,B108,B120,B139,B3,B30,B31,B36,B4,B47,B5,B55,B58,B61,B66,B75,B76,B88,B9,B90,B92,C21,C23,C24,C31,C34,C35,C37,C40,C43,C45,C5,C65,C7,C87 |
Chr7:4929329 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B138,B36,C28,C82 |
Chr7:4929355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr7:4929384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772147.1PF18052
Rx_N 7-92 aa
PF00931
NB-ARC 147-314 aa
PF23559
WHD_DRP 408-478 aa
PF23598
LRR_14 533-845 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772147.1 |
Pfam | PF18052 |
Rx_N | Domain | 7 | 92 | 7.7e-17 | 61.9 | Rx N-terminal domain |
XP_057772147.1 |
Pfam | PF00931 |
NB-ARC | Domain | 147 | 314 | 2.7e-40 | 138.5 | NB-ARC domain |
XP_057772147.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 408 | 478 | 2.7e-21 | 76.1 | Disease resistance protein Winged helix domain |
XP_057772147.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 533 | 845 | 3.6e-19 | 69.4 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。