Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000700`

染色体: Chr07 坐标: 4821335-4829249 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000700`
名称	SmilChr07G000700
描述	uncharacterized SmilChr07G000700
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4821335 - 4829249 / `-`

ID 对照

NCBI Gene ID	`LOC130991777`
GeneID	`130991777`
locus_tag	`-`
NCBI Name	`LOC130991777`
原始查询	`LOC130991777`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative triglyceride lipase [Source:NCBI gene (formerly Entrezgene);Acc:826988]; symbol=AT4G13550; hit=AT4G13550; species=arabidopsis; confidence=high
产物	putative triglyceride lipase [Source:NCBI gene (formerly Entrezgene);Acc:826988]; symbol=AT4G13550; hit=AT4G13550; species=arabidopsis; confidence=high
Arabidopsis	`AT4G13550` (AT4G13550) putative triglyceride lipase [Source:NCBI gene (formerly Entrezgene);Acc:826988] identity=57.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os04g0509100` - identity=51.8; qcov=0.932; evalue=0; confidence=high
GO	GO:0006629 (lipid metabolic process)
KEGG	-
Pfam	PF00168 (C2); PF01764 (Lipase_3)
InterPro	-
eggNOG	-
NR	GeneID:130991777

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057772152.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057772153.1`
3	Chloroplast thylakoid	类囊体	0.20000	`XP_057772152.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057772152.1`
5	Nucleus	细胞核	0.00000	`XP_057772153.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4821631`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B3,B64,C12,C45,D6
`Chr7:4822165`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr7:4822198`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,B13
`Chr7:4822210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B69,B72,C57,C72,C79
`Chr7:4822221`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B34,B93
`Chr7:4823129`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,C9,D7
`Chr7:4823156`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B87,B91,C13
`Chr7:4823169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B130,B135,B137,C50
`Chr7:4823170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A23,C49,C63,D8
`Chr7:4823299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr7:4823375`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr7:4823757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772152.1

847 aa

424

847

Lipase_3

PF00168 C2 133-229 aa PF01764 Lipase_3 583-734 aa

XP_057772153.1

688 aa

344

688

Lipase_3

PF00168 C2 3-70 aa PF01764 Lipase_3 424-575 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772152.1`	Pfam	`PF00168`	C2	Domain	133	229	4.6e-17	62.9	C2 domain
`XP_057772152.1`	Pfam	`PF01764`	Lipase_3	Domain	583	734	4.6e-31	108.3	Lipase (class 3)
`XP_057772153.1`	Pfam	`PF00168`	C2	Domain	3	70	3.9e-08	34.2	C2 domain
`XP_057772153.1`	Pfam	`PF01764`	Lipase_3	Domain	424	575	3e-31	108.9	Lipase (class 3)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916169.1
GTACAATCGAGAATGACCGTTAGCCGTAGGGGGCGCCCCCGACCTTCTCGCACTCTCTCTTTCAACCGTTTCTCAGCTCAGGTGCTCAAAAAATCATACGCCACTCTTCAAATTCATCACTAGCTGAATAGATACAACAATTTTGCATAAAGATTTCATCTTCATCCATGGCTACATTGCAATCCCACTTCTACTTCTCGCTCTCCAGCTCCCCAAAGCTCATACACTTGAAGAACCCTCATTCATTTTCCTTCTCCAAG...

XM_057916170.1
GAAGTGCCAGACAGCGTTCCTATCTGAGTCATTTGTACGCGAAATTTATGATGGCCAATTATTTGTAAAGCTAAAGAAAGGTTTCAACTTCCCTGCCATGGACCCTTGGGTAGGGGAACAAGTGATCCATATGTAATTATGCAATTGGATTGTCAGATAGTCAAAAGCAACGTCAAATGGGGGACGAAAGAACCCAAATGGAATGAGGAATTTGCGTTGAATATCAAGCAGCCGCCCATACATGATCTTCAGGTTGCGGC...

CDS

2 records

下载 CDS FASTA

LOC130991777
ATGGCTACATTGCAATCCCACTTCTACTTCTCGCTCTCCAGCTCCCCAAAGCTCATACACTTGAAGAACCCTCATTCATTTTCCTTCTCCAAGAAGATTTTTTTGCCCAAAAAGCTGTTCTCGCCCAAGAGGTTTAATGGGGTTTTGAGCTCGAGATTCATCACTTATTCTTTAGCAAGCTCAAGCAGCAGAAGCAGTAGTCCTGAGGTTGAGAAGTCTGAGATTGAGATTGAGAATGAGAGGCCTCCATTTGATATTAA...

LOC130991777
ATGCAATTGGATTGTCAGATAGTCAAAAGCAACGTCAAATGGGGGACGAAAGAACCCAAATGGAATGAGGAATTTGCGTTGAATATCAAGCAGCCGCCCATACATGATCTTCAGGTTGCGGCTTGGGACGCAAATCTTGTGGCTCCACACAAACGCATGGGGAATGCCTGTGTTAATTTGGAAAACCTCTGTGATGGAAATTCACATGAAGTGCTTCTTGACTTGGAAGGGATGGGAGGTGGTGGAAAGATAGAACTGGA...

Protein

2 records

下载 Protein FASTA

XP_057772152.1
MATLQSHFYFSLSSSPKLIHLKNPHSFSFSKKIFLPKKLFSPKRFNGVLSSRFITYSLASSSSRSSSPEVEKSEIEIENERPPFDINLAVILAGFAFEAYITPPEKTGKREMDAAKCQTAFLSESFVREIYDGQLFVKLKKGFNFPAMDPWGTSDPYVIMQLDCQIVKSNVKWGTKEPKWNEEFALNIKQPPIHDLQVAAWDANLVAPHKRMGNACVNLENLCDGNSHEVLLDLEGMGGGGKIELEVKYMSFGKIDDEKK...

XP_057772153.1
MQLDCQIVKSNVKWGTKEPKWNEEFALNIKQPPIHDLQVAAWDANLVAPHKRMGNACVNLENLCDGNSHEVLLDLEGMGGGGKIELEVKYMSFGKIDDEKKRWKIPLVTEFLEKHGLDPALKMFTGSETVQAREFVQFAFGQLKSLNDSYLQKDWLSNTKVNSDPDLNVKEKQLELENNVVNNVENSTEEIQVAENVENSTEEILVEDSWTDKQFWKTLADSVNQNVVQKLGLPAPENMKWDEFDLLKNFGLLSREIAEA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器