当前解析结果
SmilChr07G000787| 统一新 Gene ID | SmilChr07G000787 |
|---|---|
| 名称 | SmilChr07G000787 |
| 描述 | U-box domain-containing protein 13 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 5548879 - 5555507 / + |
| NCBI Gene ID | LOC130991787 |
|---|---|
| GeneID | 130991787 |
| locus_tag | - |
| NCBI Name | LOC130991787 |
| 原始查询 | LOC130991787 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | U-box domain-containing protein 13 |
| 产物 | U-box domain-containing protein 13 |
| Arabidopsis | AT3G46510 (PUB13)plant U-box 13 [Source:NCBI gene (formerly Entrezgene);Acc:823804] identity=69.4; qcov=0.988; evalue=0; confidence=high |
| Rice | Os03g0275900 (OsPUB10)- identity=64; qcov=0.949; evalue=0; confidence=high |
| GO | GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0007166 (cell surface receptor signaling pathway); GO:0016567 (protein ubiquitination) |
| KEGG | smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00514 (Arm); PF04564 (U-box); PF05536 (Neurochondrin); PF25240 (PUB2_N); PF25368 (PUB10_N); PF25598 (ARM_PUB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991787 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057772169.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057772169.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057772169.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057772169.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772169.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:5549381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr7:5549400 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B80,D5 |
Chr7:5549473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr7:5549529 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C35,C71 |
Chr7:5549556 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C60,D5 |
Chr7:5549572 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr7:5552149 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr7:5552204 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr7:5552468 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr7:5552575 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr7:5552740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr7:5552762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,B93 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772169.1PF25240
PUB2_N 28-115 aa
PF25368
PUB10_N 31-142 aa
PF04564
U-box 259-329 aa
PF25598
ARM_PUB 369-638 aa
PF00514
Arm 386-425 aa
PF00514
Arm 469-507 aa
PF05536
Neurochondrin 519-592 aa
PF00514
Arm 551-590 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772169.1 |
Pfam | PF25240 |
PUB2_N | Domain | 28 | 115 | 1.8e-07 | 31.9 | PUB2-like, N-terminal domain |
XP_057772169.1 |
Pfam | PF25368 |
PUB10_N | Domain | 31 | 142 | 5.6e-39 | 134.3 | PUB10-like, N-terminal domain |
XP_057772169.1 |
Pfam | PF04564 |
U-box | Domain | 259 | 329 | 7.7e-22 | 77.9 | U-box domain |
XP_057772169.1 |
Pfam | PF25598 |
ARM_PUB | Repeat | 369 | 638 | 2.5e-27 | 96.8 | Plant U-box protein ARM repeat region |
XP_057772169.1 |
Pfam | PF00514 |
Arm | Repeat | 386 | 425 | 2.1e-40 | 136.2 | Armadillo/beta-catenin-like repeat |
XP_057772169.1 |
Pfam | PF00514 |
Arm | Repeat | 469 | 507 | 2.1e-40 | 136.2 | Armadillo/beta-catenin-like repeat |
XP_057772169.1 |
Pfam | PF05536 |
Neurochondrin | Repeat | 519 | 592 | 5.9e-07 | 29.0 | Neurochondrin |
XP_057772169.1 |
Pfam | PF00514 |
Arm | Repeat | 551 | 590 | 2.1e-40 | 136.2 | Armadillo/beta-catenin-like repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。