当前解析结果
SmilChr07G000653| 统一新 Gene ID | SmilChr07G000653 |
|---|---|
| 名称 | SmilChr07G000653 |
| 描述 | uncharacterized SmilChr07G000653 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4395153 - 4398427 / - |
| NCBI Gene ID | LOC130991791 |
|---|---|
| GeneID | 130991791 |
| locus_tag | - |
| NCBI Name | LOC130991791 |
| 原始查询 | LOC130991791 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | lipase class 3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:827292]; symbol=AT4G16070; hit=AT4G16070; species=arabidopsis; confidence=high |
| 产物 | lipase class 3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:827292]; symbol=AT4G16070; hit=AT4G16070; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G16070 (AT4G16070)lipase class 3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:827292] identity=64.8; qcov=1.02; evalue=0; confidence=high |
| Rice | Os01g0309900 (OJ1116_C07.9)- identity=60.2; qcov=0.992; evalue=0; confidence=high |
| GO | GO:0016042 (lipid catabolic process) |
| KEGG | - |
| Pfam | PF01764 (Lipase_3); PF03893 (Lipase3_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991791 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057772175.1 |
| 2 | Chloroplast | 叶绿体 | 0.80000 | XP_057772175.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772175.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772175.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772175.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4395339 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A18,B35,B82,C85 |
Chr7:4395451 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
Chr7:4395462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B19,C1 |
Chr7:4395465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,C61 |
Chr7:4395482 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr7:4395485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr7:4395505 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B117,B18,B28,B80,B84 |
Chr7:4395525 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr7:4395570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C65,C84 |
Chr7:4395653 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C65,C84 |
Chr7:4395656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B87,D6 |
Chr7:4395732 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C65,C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772175.1PF03893
Lipase3_N 49-117 aa
PF01764
Lipase_3 184-321 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772175.1 |
Pfam | PF03893 |
Lipase3_N | Domain | 49 | 117 | 3e-17 | 63.1 | Lipase 3 N-terminal region |
XP_057772175.1 |
Pfam | PF01764 |
Lipase_3 | Domain | 184 | 321 | 6.3e-30 | 104.6 | Lipase (class 3) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。