当前解析结果
SmilChr07G000746| 统一新 Gene ID | SmilChr07G000746 |
|---|---|
| 名称 | SmilChr07G000746 |
| 描述 | heat shock cognate 70 kDa protein-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 5249752 - 5252099 / - |
| NCBI Gene ID | LOC130991794 |
|---|---|
| GeneID | 130991794 |
| locus_tag | - |
| NCBI Name | LOC130991794 |
| 原始查询 | LOC130991794 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heat shock cognate 70 kDa protein-like |
| 产物 | heat shock cognate 70 kDa protein-like |
| Arabidopsis | AT3G12580 (HSP70)heat shock protein 70 [Source:NCBI gene (formerly Entrezgene);Acc:820438] identity=73.1; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0840100 (OsMed37_1)- identity=74.3; qcov=1; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016887 (ATP hydrolysis activity); GO:0031072 (heat shock protein binding); GO:0034620 (cellular response to unfolded protein); GO:0042026 (protein refolding); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085); GO:0051787 (misfolded protein binding); GO:0140662 (ATP-dependent protein folding chaperone) |
| KEGG | smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00012 (HSP70); PF06723 (MreB_Mbl) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991794 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057772178.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057772178.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772178.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772178.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772178.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:5249913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr7:5249942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,C65 |
Chr7:5249944 |
T |
TC |
1bp_insertion | frameshift_variant | 2 | B92,C72 |
Chr7:5249944 |
T |
TC |
1bp_insertion | CDS_variant | 2 | B92,C72 |
Chr7:5249945 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B40,B97 |
Chr7:5249955 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr7:5249957 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr7:5250011 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B85,B89,C14,C65 |
Chr7:5250027 |
GAT |
G |
2bp_deletion | frameshift_variant | 34 | A11,A25,A3,B10,B109,B111,B127,B13,B133,B29,B32,B4,B42,B43,B51,B53,B58,B71,B8,B91,B95,C11,C15,C26,C30,C33,C37,C39,C40,C47,C54,C6,C61,C79 |
Chr7:5250141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr7:5250163 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr7:5250210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772178.1PF00012
HSP70 9-613 aa
PF06723
MreB_Mbl 128-381 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772178.1 |
Pfam | PF00012 |
HSP70 | Family | 9 | 613 | 1.1e-232 | 774.3 | Hsp70 protein |
XP_057772178.1 |
Pfam | PF06723 |
MreB_Mbl | Family | 128 | 381 | 3.6e-13 | 49.8 | MreB/Mbl protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。