Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000654`

染色体: Chr07 坐标: 4399951-4404966 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000654`
名称	SmilChr07G000654
描述	uncharacterized SmilChr07G000654
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4399951 - 4404966 / `+`

ID 对照

NCBI Gene ID	`LOC130991796`
GeneID	`130991796`
locus_tag	`-`
NCBI Name	`LOC130991796`
原始查询	`LOC130991796`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:830994]; symbol=AT5G11240; hit=AT5G11240; species=arabidopsis; confidence=high
产物	transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:830994]; symbol=AT5G11240; hit=AT5G11240; species=arabidopsis; confidence=high
Arabidopsis	`AT5G11240` (AT5G11240) transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:830994] identity=54.5; qcov=0.957; evalue=0; confidence=high
Rice	`Os03g0300300` (OsWD40-68) - identity=44.6; qcov=1.07; evalue=1.77e-177; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40); PF04003 (Utp12)
InterPro	-
eggNOG	-
NR	GeneID:130991796

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057772182.1`
2	Nucleolus	核仁	0.40000	`XP_057772182.1`
3	Chromosome	染色体	0.00000	`XP_057772182.1`
4	Centromere	着丝粒	0.00000	`XP_057772182.1`
5	Chromatin	染色质	0.00000	`XP_057772182.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4401874`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr7:4401877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B112,B137,B34,C33,C46
`Chr7:4402149`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B19,C1,C2,C35
`Chr7:4402366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr7:4402493`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B19,C1
`Chr7:4402628`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B35,B82,B90,C85
`Chr7:4402646`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B57,B91
`Chr7:4402696`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:4402775`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B12,B55,C32,C68
`Chr7:4402853`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B123,C83
`Chr7:4402896`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:4402898`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B87,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772182.1

605 aa

302

605

WD40

Utp12

PF00400 WD40 5-33 aa PF00400 WD40 113-141 aa PF00400 WD40 149-177 aa PF00400 WD40 189-226 aa PF04003 Utp12 461-556 aa

XP_057772183.1

600 aa

300

600

WD40

Utp12

PF00400 WD40 5-33 aa PF00400 WD40 113-141 aa PF00400 WD40 149-177 aa PF00400 WD40 189-226 aa PF04003 Utp12 461-551 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772182.1`	Pfam	`PF00400`	WD40	Repeat	5	33	7e-18	65.0	WD domain, G-beta repeat
`XP_057772182.1`	Pfam	`PF00400`	WD40	Repeat	113	141	7e-18	65.0	WD domain, G-beta repeat
`XP_057772182.1`	Pfam	`PF00400`	WD40	Repeat	149	177	7e-18	65.0	WD domain, G-beta repeat
`XP_057772182.1`	Pfam	`PF00400`	WD40	Repeat	189	226	7e-18	65.0	WD domain, G-beta repeat
`XP_057772182.1`	Pfam	`PF04003`	Utp12	Family	461	556	4.6e-09	37.1	Dip2/Utp12 Family
`XP_057772183.1`	Pfam	`PF00400`	WD40	Repeat	5	33	7e-18	65.0	WD domain, G-beta repeat
`XP_057772183.1`	Pfam	`PF00400`	WD40	Repeat	113	141	7e-18	65.0	WD domain, G-beta repeat
`XP_057772183.1`	Pfam	`PF00400`	WD40	Repeat	149	177	7e-18	65.0	WD domain, G-beta repeat
`XP_057772183.1`	Pfam	`PF00400`	WD40	Repeat	189	226	7e-18	65.0	WD domain, G-beta repeat
`XP_057772183.1`	Pfam	`PF04003`	Utp12	Family	461	551	1e-11	45.6	Dip2/Utp12 Family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916200.1
CACTACTTCAAAGTTTATTCACTCATACCAGCAAACGTTCTGCAGCTCACGCCGCCATCTCCACCACCGTCTGCGGCGGCGCATCATTCAACTTCTATTGCAGTATCTCATCTTACTAACACAAACCCACGAAGAAAACAGCTCGTTAATTTTCTTTTTCTTTTCTTCCGGCAACTTTTTTTCGGATTTTGAGACTTCTAGAAAAAGAAAAATGGGGTCGTCAAATATAAGAGATGTTTTAACTTCGTTTAGTCCGAATT...

XM_057916199.1
AAAGTTTATTCACTCATACCAGCAAACGTTCTGCAGCTCACGCCGCCATCTCCACCACCGTCTGCGGCGGCGCATCATTCAACTTCTATTGCAGTATCTCATCTTACTAACACAAACCCACGAAGAAAACAGCTCGTTAATTTTCTTTTTCTTTTCTTCCGGCAACTTTTTTTCGGATTTTGAGACTTCTAGAAAAAGAAAAATGGGGTCGTCAAATATAAGAGATGTTTTAACTTCGTTTAGTCCGAATTTGGACTTGT...

CDS

2 records

下载 CDS FASTA

LOC130991796
ATGGGGTCGTCAAATATAAGAGATGTTTTAACTTCGTTTAGTCCGAATTTGGACTTGTTTGCCATCACTCTCGGTGATGGTCGAATAAAGATATGGGACACCGGGAAGGGTCAGGTGCAGACTGAATTTGCTGATCTTGCTTCAACAGAGACGATGAGTGTGTTTGGGAACCAGGAGGGAGGGCATCTTTCTATGGATTATACATGTATGAAGTGGTTTTCTCTGGAGAAAAAGAAGAAAAGGAAGCTCGGGAGTTCCCT...

Protein

2 records

下载 Protein FASTA

XP_057772182.1
MGSSNIRDVLTSFSPNLDLFAITLGDGRIKIWDTGKGQVQTEFADLASTETMSVFGNQEGGHLSMDYTCMKWFSLEKKKKRKLGSSLLLLGTGGGDVLALDVSAGQLKWRVNNCHPGGVSAISFPAHGSHIYTAGADGMVCEIEAMSGNLLNKFSAASRAISSLAISPDGRMVATAASQLKIFNSSNHKKLHKFSGHPGAVRCMIFSEDGKYVLSSAQGERYIAVWAVDGSKKKSVSVVLAMDHPAVFLDSKFINTDDAD...

XP_057772183.1
MGSSNIRDVLTSFSPNLDLFAITLGDGRIKIWDTGKGQVQTEFADLASTETMSVFGNQEGGHLSMDYTCMKWFSLEKKKKRKLGSSLLLLGTGGGDVLALDVSAGQLKWRVNNCHPGGVSAISFPAHGSHIYTAGADGMVCEIEAMSGNLLNKFSAASRAISSLAISPDGRMVATAASQLKIFNSSNHKKLHKFSGHPGAVRCMIFSEDGKYVLSSAQGERYIAVWAVDGSKKKSVSVVLAMDHPAVFLDSKFINTDDAD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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