当前解析结果
SmilChr07G000658| 统一新 Gene ID | SmilChr07G000658 |
|---|---|
| 名称 | SmilChr07G000658 |
| 描述 | fatty acyl-CoA reductase 2, chloroplastic-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4439102 - 4444012 / + |
| NCBI Gene ID | LOC130991805 |
|---|---|
| GeneID | 130991805 |
| locus_tag | - |
| NCBI Name | LOC130991805 |
| 原始查询 | LOC130991805 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | fatty acyl-CoA reductase 2, chloroplastic-like |
| 产物 | fatty acyl-CoA reductase 2%2C chloroplastic-like |
| Arabidopsis | AT3G11980 (MS2)Jojoba acyl CoA reductase-related male sterility protein [Source:NCBI gene (formerly Entrezgene);Acc:820372] identity=46.4; qcov=0.918; evalue=5.24e-149; confidence=high |
| Rice | Os03g0167600 (OsMS2)- identity=42.5; qcov=0.898; evalue=1.47e-137; confidence=medium |
| GO | GO:0010345 (suberin biosynthetic process); GO:0035336 (long-chain fatty-acyl-CoA metabolic process); GO:0043231 (intracellular membrane-bounded organelle); GO:0080019 (alcohol-forming very long-chain fatty acyl-CoA reductase activity) |
| KEGG | smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01370 (Epimerase); PF03015 (Sterile); PF07993 (NAD_binding_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991805 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057772194.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.60000 | XP_057772194.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772194.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772194.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772194.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4439138 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | A3 |
Chr7:4439138 |
AG |
A |
1bp_deletion | CDS_variant | 1 | A3 |
Chr7:4442327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B13,B52,B98,C55,C63 |
Chr7:4443076 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr7:4443084 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,B95 |
Chr7:4443153 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr7:4443255 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C3 |
Chr7:4443302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:4443345 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B52,B98,C55,C63,D6 |
Chr7:4443358 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B35,B82,C85 |
Chr7:4443701 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A24,C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772194.1PF01370
Epimerase 80-234 aa
PF07993
NAD_binding_4 82-385 aa
PF03015
Sterile 487-555 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772194.1 |
Pfam | PF01370 |
Epimerase | Family | 80 | 234 | 1.8e-07 | 31.6 | NAD dependent epimerase/dehydratase family |
XP_057772194.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 82 | 385 | 2.7e-72 | 243.7 | Male sterility protein |
XP_057772194.1 |
Pfam | PF03015 |
Sterile | Family | 487 | 555 | 2.2e-13 | 50.9 | Male sterility protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。