当前解析结果
SmilChr07G000728| 统一新 Gene ID | SmilChr07G000728 |
|---|---|
| 名称 | SmilChr07G000728 |
| 描述 | germacrene A synthase-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 5063637 - 5066955 / - |
| NCBI Gene ID | LOC130991808 |
|---|---|
| GeneID | 130991808 |
| locus_tag | - |
| NCBI Name | LOC130991808 |
| 原始查询 | LOC130991808 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | germacrene A synthase-like |
| 产物 | germacrene A synthase-like |
| Arabidopsis | AT5G23960 (TPS21)terpene synthase 21 [Source:NCBI gene (formerly Entrezgene);Acc:832461] identity=40.3; qcov=0.987; evalue=4.48e-140; confidence=medium |
| Rice | Os08g0139700 (OsTPS29)- identity=36.6; qcov=0.975; evalue=1.28e-107; confidence=medium |
| GO | GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process) |
| KEGG | - |
| Pfam | PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991808 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057772197.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057772197.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772197.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772197.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772197.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:5063796 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B15,B66,B86,C10,C76 |
Chr7:5063802 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr7:5063810 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | A19,C77 |
Chr7:5063810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,C77 |
Chr7:5063835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B2,C8 |
Chr7:5063837 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,B4,C5 |
Chr7:5063838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,C77 |
Chr7:5063846 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,C14 |
Chr7:5063897 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B15,B66,B86,C10,C76 |
Chr7:5063901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B57,B80,B91,D5 |
Chr7:5063910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B15,B66,B86,C10,C76 |
Chr7:5063919 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772197.1PF01397
Terpene_synth 21-196 aa
PF03936
Terpene_synth_C 253-491 aa
PF19086
Terpene_syn_C_2 293-491 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772197.1 |
Pfam | PF01397 |
Terpene_synth | Repeat | 21 | 196 | 1.5e-55 | 188.6 | Terpene synthase, N-terminal domain |
XP_057772197.1 |
Pfam | PF03936 |
Terpene_synth_C | Domain | 253 | 491 | 9.7e-92 | 307.3 | Terpene synthase family, metal binding domain |
XP_057772197.1 |
Pfam | PF19086 |
Terpene_syn_C_2 | Domain | 293 | 491 | 3.5e-49 | 168.0 | Terpene synthase family 2, C-terminal metal binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。