Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000704`

染色体: Chr07 坐标: 4851765-4857209 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000704`
名称	SmilChr07G000704
描述	carboxyl-terminal-processing peptidase 2, chloroplastic
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4851765 - 4857209 / `-`

ID 对照

NCBI Gene ID	`LOC130991810`
GeneID	`130991810`
locus_tag	`-`
NCBI Name	`LOC130991810`
原始查询	`LOC130991810`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	carboxyl-terminal-processing peptidase 2, chloroplastic
产物	carboxyl-terminal-processing peptidase 2%2C chloroplastic
Arabidopsis	`AT4G17740` (AT4G17740) Peptidase S41 family protein [Source:NCBI gene (formerly Entrezgene);Acc:827495] identity=73.3; qcov=0.791; evalue=0; confidence=high
Rice	`Os06g0318600` (OsCttP3) - identity=40.4; qcov=0.693; evalue=2.06e-77; confidence=medium
GO	GO:0004175 (endopeptidase activity); GO:0005515 (protein binding); GO:0006508 (proteolysis); GO:0008236 (serine-type peptidase activity)
KEGG	-
Pfam	PF00595 (PDZ); PF03572 (Peptidase_S41); PF13180 (PDZ_2); PF17820 (PDZ_6)
InterPro	-
eggNOG	-
NR	GeneID:130991810

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057772199.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057772199.1`
3	Chloroplast thylakoid	类囊体	0.80000	`XP_057772200.1`
4	Nucleus	细胞核	0.00000	`XP_057772199.1`
5	Chromosome	染色体	0.00000	`XP_057772199.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4852121`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr7:4852281`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr7:4852418`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr7:4852441`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B5,B75,B9
`Chr7:4852445`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,B69,B91,C14,C73
`Chr7:4853413`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A14,B103,B21,B84,C36
`Chr7:4853423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A25,A8,B10,B65,D1
`Chr7:4853445`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B118,B87,D5
`Chr7:4853752`	`G`	`GAC`	2bp_insertion	frameshift_variant	4	B91,B95,B98,C50
`Chr7:4853752`	`G`	`GAC`	2bp_insertion	CDS_variant	4	B91,B95,B98,C50
`Chr7:4853755`	`T`	`TCC`	2bp_insertion	frameshift_variant	4	B91,B95,B98,C50
`Chr7:4853755`	`T`	`TCC`	2bp_insertion	CDS_variant	4	B91,B95,B98,C50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772199.1

548 aa

274

548

PDZ

PDZ_2

PDZ_6

Peptidase_S41

PF00595 PDZ 243-316 aa PF13180 PDZ_2 258-324 aa PF17820 PDZ_6 263-317 aa PF03572 Peptidase_S41 354-514 aa

XP_057772200.1

535 aa

268

535

PDZ

PDZ_2

PDZ_6

Peptidase_S41

PF00595 PDZ 230-303 aa PF13180 PDZ_2 245-311 aa PF17820 PDZ_6 250-304 aa PF03572 Peptidase_S41 341-501 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772199.1`	Pfam	`PF00595`	PDZ	Domain	243	316	2.3e-07	31.8	PDZ domain
`XP_057772199.1`	Pfam	`PF13180`	PDZ_2	Domain	258	324	1.4e-06	29.2	PDZ domain
`XP_057772199.1`	Pfam	`PF17820`	PDZ_6	Domain	263	317	6.1e-13	49.0	PDZ domain
`XP_057772199.1`	Pfam	`PF03572`	Peptidase_S41	Family	354	514	5.1e-53	179.7	Peptidase family S41
`XP_057772200.1`	Pfam	`PF00595`	PDZ	Domain	230	303	2.2e-07	31.9	PDZ domain
`XP_057772200.1`	Pfam	`PF13180`	PDZ_2	Domain	245	311	1.4e-06	29.2	PDZ domain
`XP_057772200.1`	Pfam	`PF17820`	PDZ_6	Domain	250	304	5.9e-13	49.0	PDZ domain
`XP_057772200.1`	Pfam	`PF03572`	Peptidase_S41	Family	341	501	4.9e-53	179.8	Peptidase family S41

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916217.1
GCTCATAACAATTCAAGCCACATATTATCCTTCTACAAAAGAAAAAGAAAAAGAAAAAGAAAAAATGCCAAATAAAAATTAAAGAAGAATCCCGCCATTGATAACTTCCAATCTAATTCGCGAAAACTTCGACGTTGCATATTCGGCTGCAGAATTTTCCCGAATTTTCCAAATGGAAGTGATTTTGGGAAGCTCCGCCGCCCCATCTTTCACGGTCTGCTATTCCCGCAGAAATCCCACTGCTTACTCTTCCGAGGTGC...

XM_057916216.1
ATAACAATTCAAGCCACATATTATCCTTCTACAAAAGAAAAAGAAAAAGAAAAAGAAAAAATGCCAAATAAAAATTAAAGAAGAATCCCGCCATTGATAACTTCCAATCTAATTCGCGAAAACTTCGACGTTGCATATTCGGCTGCAGAATTTTCCCGAATTTTCCAAATGGAAGTGATTTTGGGAAGCTCCGCCGCCCCATCTTTCACGGTCTGCTATTCCCGCAGAAATCCCACTGCTTACTCTTCCGAGCCCTCATA...

CDS

2 records

下载 CDS FASTA

LOC130991810
ATGGAAGTGATTTTGGGAAGCTCCGCCGCCCCATCTTTCACGGTCTGCTATTCCCGCAGAAATCCCACTGCTTACTCTTCCGAGGTGCTTCTCTTGAACCATTTTCCAGTAAAGAAGGGTGGAAGCTGGTATTTGAAGAGTAAAGAACGAAGTACTGCAATTTGTTTCTCATCTCAGTCTCCTGATCGGAGCAACATATACAAGAATTTCCCCCGGTCGTTTTGGTGGCTCGATAAGAGATTTGTGCTGCATTGTAGTTT...

LOC130991810
ATGGAAGTGATTTTGGGAAGCTCCGCCGCCCCATCTTTCACGGTCTGCTATTCCCGCAGAAATCCCACTGCTTACTCTTCCGAGCCCTCATATTTGCTAGGAAAAAAAAATCGATGCCTTCAGGTGCTTCTCTTGAACCATTTTCCAGTAAAGAAGGGTGGAAGCTGGTATTTGAAGAGTAAAGAACGAAGTACTGCAATTTGTTTCTCATCTCAGTCTCCTGATCGGAGCAACATATACAAGAATTTCCCCCGGTCGTT...

Protein

2 records

下载 Protein FASTA

XP_057772199.1
MEVILGSSAAPSFTVCYSRRNPTAYSSEPSYLLGKKNRCLQVLLLNHFPVKKGGSWYLKSKERSTAICFSSQSPDRSNIYKNFPRSFWWLDKRFVLHCSFFGLKTECIPRLRKISISLRKEVKHAERLNNFIPSFSLHLITGVMLFMTLGATVTKTPSWALTEENLLFLEAWRAVDRAYVDKTFNGQSWFRYRENALRTEPMNTREETYAAIRKMVSTLDDPFTRFLEPKKFKSLRSGTRSTLTGVGLSIGYPKKDSSDS...

XP_057772200.1
MEVILGSSAAPSFTVCYSRRNPTAYSSEVLLLNHFPVKKGGSWYLKSKERSTAICFSSQSPDRSNIYKNFPRSFWWLDKRFVLHCSFFGLKTECIPRLRKISISLRKEVKHAERLNNFIPSFSLHLITGVMLFMTLGATVTKTPSWALTEENLLFLEAWRAVDRAYVDKTFNGQSWFRYRENALRTEPMNTREETYAAIRKMVSTLDDPFTRFLEPKKFKSLRSGTRSTLTGVGLSIGYPKKDSSDSGLVVVSAAPGGPA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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