当前解析结果
SmilChr07G000666| 统一新 Gene ID | SmilChr07G000666 |
|---|---|
| 名称 | SmilChr07G000666 |
| 描述 | (-)-5-epieremophilene synthase STPS3-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4508949 - 4511449 / + |
| NCBI Gene ID | LOC130991818 |
|---|---|
| GeneID | 130991818 |
| locus_tag | - |
| NCBI Name | LOC130991818 |
| 原始查询 | LOC130991818 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | (-)-5-epieremophilene synthase STPS3-like |
| 产物 | (-)-5-epieremophilene synthase STPS3-like |
| Arabidopsis | AT5G23960 (TPS21)terpene synthase 21 [Source:NCBI gene (formerly Entrezgene);Acc:832461] identity=40.6; qcov=1; evalue=2.99e-140; confidence=medium |
| Rice | Os08g0139700 (OsTPS29)- identity=37.6; qcov=1; evalue=2.33e-114; confidence=medium |
| GO | GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process) |
| KEGG | - |
| Pfam | PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991818 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057772206.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057772206.1 |
| 3 | Chloroplast | 叶绿体 | 0.20000 | XP_057772206.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057772206.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772206.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4509060 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr7:4509227 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr7:4509265 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B21,C30,C69 |
Chr7:4509287 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C46,C64,C66 |
Chr7:4509403 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B90 |
Chr7:4509669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B136,B64,C12,C33 |
Chr7:4509692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr7:4509706 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A8,B35,C43 |
Chr7:4509835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C10,C42 |
Chr7:4509888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr7:4509937 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr7:4509952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C17,C35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772206.1PF01397
Terpene_synth 19-193 aa
PF03936
Terpene_synth_C 250-488 aa
PF19086
Terpene_syn_C_2 290-488 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772206.1 |
Pfam | PF01397 |
Terpene_synth | Repeat | 19 | 193 | 1.3e-54 | 185.5 | Terpene synthase, N-terminal domain |
XP_057772206.1 |
Pfam | PF03936 |
Terpene_synth_C | Domain | 250 | 488 | 2.1e-89 | 299.7 | Terpene synthase family, metal binding domain |
XP_057772206.1 |
Pfam | PF19086 |
Terpene_syn_C_2 | Domain | 290 | 488 | 1.7e-46 | 159.2 | Terpene synthase family 2, C-terminal metal binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。