Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000600`

染色体: Chr07 坐标: 4098028-4102778 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000600`
名称	SmilChr07G000600
描述	ubiquitin-like-specific protease ESD4
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4098028 - 4102778 / `-`

ID 对照

NCBI Gene ID	`LOC130991825`
GeneID	`130991825`
locus_tag	`-`
NCBI Name	`LOC130991825`
原始查询	`LOC130991825`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin-like-specific protease ESD4
产物	ubiquitin-like-specific protease ESD4
Arabidopsis	`AT4G15880` (ESD4) Cysteine proteinases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827269] identity=48.6; qcov=1.01; evalue=2.69e-154; confidence=high
Rice	`Os01g0355900` - identity=60.1; qcov=0.566; evalue=7.28e-115; confidence=medium
GO	GO:0005634 (nucleus); GO:0016926 (protein desumoylation); GO:0016929 (deSUMOylase activity)
KEGG	-
Pfam	PF02902 (Peptidase_C48)
InterPro	-
eggNOG	-
NR	GeneID:130991825

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057772216.1`
2	Cytoplasm	细胞质	0.20000	`XP_057772216.1`
3	Chromosome	染色体	0.00000	`XP_057772216.1`
4	Centromere	着丝粒	0.00000	`XP_057772216.1`
5	Chromatin	染色质	0.00000	`XP_057772216.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4098334`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr7:4100689`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B34,B80,C13,C34,C56
`Chr7:4100958`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B20,C8
`Chr7:4101097`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr7:4101695`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,C2,C26,D5
`Chr7:4101776`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A3,B12,B40,B48,B71
`Chr7:4101810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:4101815`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B28,B80,B87,D6
`Chr7:4102371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772216.1

517 aa

258

517

Peptidase_C48

PF02902 Peptidase_C48 327-489 aa

XP_057772217.1

514 aa

257

514

Peptidase_C48

PF02902 Peptidase_C48 327-508 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772216.1`	Pfam	`PF02902`	Peptidase_C48	Domain	327	489	9.5e-40	137.5	Ulp1 protease family, C-terminal catalytic domain
`XP_057772217.1`	Pfam	`PF02902`	Peptidase_C48	Domain	327	508	2.5e-43	149.1	Ulp1 protease family, C-terminal catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916233.1
AATGACTATATATTTTCTACAAATATTAGGAAAGACTTCAATCTCAAAAGAAATTATCAGTCACGTTTATAATTCCAATTCGCCTTTGGCAGCTATTTCCATAGCACAATCCTTCGTCGATTGCTTTCAAATTCTCGAAAAATAGTTGCTCGCCAACCAACTCTCCGTCGGAAACCCCAATTCGCCTTGATTTTCCGATCAATTTCATCTCCTGCATACCCTTTTGCCCAAATTGAGAAACCCCACGCCAGTTTTACTGC...

XM_057916234.1
AATGACTATATATTTTCTACAAATATTAGGAAAGACTTCAATCTCAAAAGAAATTATCAGTCACGTTTATAATTCCAATTCGCCTTTGGCAGCTATTTCCATAGCACAATCCTTCGTCGATTGCTTTCAAATTCTCGAAAAATAGTTGCTCGCCAACCAACTCTCCGTCGGAAACCCCAATTCGCCTTGATTTTCCGATCAATTTCATCTCCTGCATACCCTTTTGCCCAAATTGAGAAACCCCACGCCAGTTTTACTGC...

CDS

2 records

下载 CDS FASTA

LOC130991825
ATGGGGGCTCTAACCAGCAACAGGAAGCGAGGAGACGATTACTTCAAAAACCTTACGTCTCCGACCCCGTTTGACCAATCGTACGGCCACATTTCGAAAAAACCGAAGCTTTCAGCTTCTATGAGTCAAACTACGGCGGAGACTAATCGTGCGGCGGCGTCGAATTCGGTTGTTGCCAGAATTGCTCAGTATCCAGATAGGAAATTGGGGCTTCCGAGAGTAGTTCACGCCCCAGTTAGGCATAGATTGGGAAGTTTTTC...

Protein

2 records

下载 Protein FASTA

XP_057772216.1
MGALTSNRKRGDDYFKNLTSPTPFDQSYGHISKKPKLSASMSQTTAETNRAAASNSVVARIAQYPDRKLGLPRVVHAPVRHRLGSFSSAKNTVSSASSRESPPNTMGKYNFFSRQLERLKDSAFRSLRYVPWKQKEKEKEVIELDSSDSEEQDRDAISNDSSIEEVEIVDSVGRRRKGGEGAVEKEVRSLDSSVVTDVSNAVARVHDMEKNGLSLSDPMADDSGRPPYKSLYDSTKKRDFIIANINFDIDLQEKRVQRLQ...

XP_057772217.1
MGALTSNRKRGDDYFKNLTSPTPFDQSYGHISKKPKLSASMSQTTAETNRAAASNSVVARIAQYPDRKLGLPRVVHAPVRHRLGSFSSAKNTVSSASSRESPPNTMGKYNFFSRQLERLKDSAFRSLRYVPWKQKEKEKEVIELDSSDSEEQDRDAISNDSSIEEVEIVDSVGRRRKGGEGAVEKEVRSLDSSVVTDVSNAVARVHDMEKNGLSLSDPMADDSGRPPYKSLYDSTKKRDFIIANINFDIDLQEKRVQRLQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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