当前解析结果
SmilChr07G000660| 统一新 Gene ID | SmilChr07G000660 |
|---|---|
| 名称 | SmilChr07G000660 |
| 描述 | beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4456229 - 4458000 / - |
| NCBI Gene ID | LOC130991844 |
|---|---|
| GeneID | 130991844 |
| locus_tag | - |
| NCBI Name | LOC130991844 |
| 原始查询 | LOC130991844 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like |
| 产物 | beta-D-glucosyl crocetin beta-1%2C6-glucosyltransferase-like |
| Arabidopsis | AT5G65550 (AT5G65550)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836681] identity=32.4; qcov=0.987; evalue=2.03e-65; confidence=low |
| Rice | Os07g0672700- identity=43.7; qcov=1.05; evalue=1.01e-119; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991844 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057772240.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057772240.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772240.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772240.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772240.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4456552 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr7:4456578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr7:4456588 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B29,C15,C4 |
Chr7:4456652 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr7:4456655 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B32,C71,C78 |
Chr7:4456664 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:4456667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr7:4456673 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:4456937 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,C8 |
Chr7:4456950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr7:4457130 |
C |
CAT |
2bp_insertion | frameshift_variant | 1 | B95 |
Chr7:4457130 |
C |
CAT |
2bp_insertion | CDS_variant | 1 | B95 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772240.1PF26168
Glyco_transf_N 11-231 aa
PF00201
UDPGT 249-390 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772240.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 11 | 231 | 2.8e-09 | 37.9 | Glycosyltransferase, N-terminal domain |
XP_057772240.1 |
Pfam | PF00201 |
UDPGT | Family | 249 | 390 | 1.7e-17 | 64.2 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。