Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000696`

染色体: Chr07 坐标: 4774610-4776959 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000696`
名称	SmilChr07G000696
描述	probable indole-3-pyruvate monooxygenase YUCCA3
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4774610 - 4776959 / `-`

ID 对照

NCBI Gene ID	`LOC130991851`
GeneID	`130991851`
locus_tag	`-`
NCBI Name	`LOC130991851`
原始查询	`LOC130991851`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable indole-3-pyruvate monooxygenase YUCCA3
产物	probable indole-3-pyruvate monooxygenase YUCCA3
Arabidopsis	`AT1G04610` (YUC3) YUCCA 3 [Source:NCBI gene (formerly Entrezgene);Acc:839474] identity=65.6; qcov=0.976; evalue=0; confidence=high
Rice	`Os04g0128900` (YUCCA7) - identity=62.8; qcov=0.954; evalue=0; confidence=high
GO	GO:0004497 (monooxygenase activity); GO:0050660 (flavin adenine dinucleotide binding)
KEGG	smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00743 (FMO-like); PF07992 (Pyr_redox_2); PF13434 (Lys_Orn_oxgnase); PF13450 (NAD_binding_8); PF13738 (Pyr_redox_3)
InterPro	-
eggNOG	-
NR	GeneID:130991851

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057772249.1`
2	Lipid droplet	脂滴	0.20000	`XP_057772249.1`
3	Nucleus	细胞核	0.00000	`XP_057772249.1`
4	Chromosome	染色体	0.00000	`XP_057772249.1`
5	Centromere	着丝粒	0.00000	`XP_057772249.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4774997`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr7:4775018`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:4775039`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr7:4775382`	`C`	`CA`	1bp_insertion	frameshift_variant	1	C63
`Chr7:4775382`	`C`	`CA`	1bp_insertion	CDS_variant	1	C63
`Chr7:4775512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr7:4775563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B118,B127,B95
`Chr7:4775566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr7:4775641`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr7:4776240`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B110,C26,C82,D4
`Chr7:4776438`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr7:4776511`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B125,B44,B68,B71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772249.1

417 aa

208

417

Pyr_redox_2

Pyr_redox_3

NAD_binding_8

FMO-like

Lys_Orn_oxgnase

PF07992 Pyr_redox_2 26-207 aa PF13738 Pyr_redox_3 26-218 aa PF13450 NAD_binding_8 27-68 aa PF00743 FMO-like 27-343 aa PF13434 Lys_Orn_oxgnase 91-208 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772249.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	26	207	2e-10	41.3	Pyridine nucleotide-disulphide oxidoreductase
`XP_057772249.1`	Pfam	`PF13738`	Pyr_redox_3	Family	26	218	4.9e-26	92.4	Pyridine nucleotide-disulphide oxidoreductase
`XP_057772249.1`	Pfam	`PF13450`	NAD_binding_8	Domain	27	68	4e-05	24.5	NAD(P)-binding Rossmann-like domain
`XP_057772249.1`	Pfam	`PF00743`	FMO-like	Family	27	343	1.7e-23	83.6	Flavin-binding monooxygenase-like
`XP_057772249.1`	Pfam	`PF13434`	Lys_Orn_oxgnase	Family	91	208	2.3e-12	47.4	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916266.1
AATCCCCCCTCCACTTATTCCCACCTTTCTCCTCTCTTTTTCCTCCTAATTGTCTCATCATCAAACAATATTCAAATCATTCCCTCTATCTCTCACACACACACAACATCACCACATTGCTTTGAACAAACATTCTCCATGACAAACATGGATCATCACCAAGAGGAGGAGCTGTTCACGGGCGGGCGACGCTGCGTGCTCGTGAACGGCCCCCTCATCGTGGGGGCCGGCCCCTCCGGCCTCGCAGTCGGGGCCGGCCT...

CDS

1 records

下载 CDS FASTA

LOC130991851
ATGACAAACATGGATCATCACCAAGAGGAGGAGCTGTTCACGGGCGGGCGACGCTGCGTGCTCGTGAACGGCCCCCTCATCGTGGGGGCCGGCCCCTCCGGCCTCGCAGTCGGGGCCGGCCTCAAGCGGCAAGGCGTCCCCTTCCTCATCCTCGAGCGCGCCAACTGCATTGCCTCTCTGTGGCAGAAGAAAACCTACGACCGCCTCAGCCTCCACCTCCCCAAACACTTCTGCCAGCTCCCTTACTTCCCTTTTCCGGC...

Protein

1 records

下载 Protein FASTA

XP_057772249.1
MTNMDHHQEEELFTGGRRCVLVNGPLIVGAGPSGLAVGAGLKRQGVPFLILERANCIASLWQKKTYDRLSLHLPKHFCQLPYFPFPATFPEYPSKQQFIDYLESYAKHFGISPIFDESVESAKYDAACGLWRVRSSAAADYLCRWIVVATGENAEKVVPEFEGLSGFAGNVVHACDYKSGEPFAGKRVLVVGCGNSGMEVSLDLCHHRALPSMVVRSSIHVLPKNVFGISTFELAGLMTKWLPLRVADKILVAAARLILG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器