Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000741`

染色体: Chr07 坐标: 5161433-5233983 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000741`
名称	SmilChr07G000741
描述	nuclear polyadenylated RNA-binding protein 3-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	5161433 - 5233983 / `-`

ID 对照

NCBI Gene ID	`LOC130991856`
GeneID	`130991856`
locus_tag	`-`
NCBI Name	`LOC130991856`
原始查询	`LOC130991856`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear polyadenylated RNA-binding protein 3-like
产物	nuclear polyadenylated RNA-binding protein 3-like
Arabidopsis	`AT4G13440` (AT4G13440) Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:826976] identity=35.6; qcov=0.375; evalue=1.61e-24; confidence=low
Rice	`-` -
GO	GO:0005509 (calcium ion binding)
KEGG	-
Pfam	PF13202 (EF-hand_5); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:130991856

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.40000	`XP_057772255.1`
2	Cytoplasm	细胞质	0.20000	`XP_057772255.1`
3	Vacuole	液泡	0.20000	`XP_057772255.1`
4	Lipid droplet	脂滴	0.20000	`XP_057772255.1`
5	Nucleus	细胞核	0.00000	`XP_057772255.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:5161664`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B52,C65
`Chr7:5162399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B4,B58,C39,C40,C65
`Chr7:5162441`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,A16,B31,B44,C83
`Chr7:5165549`	`CAT`	`C`	2bp_deletion	frameshift_variant	5	B5,B57,B9,B91,C50
`Chr7:5165549`	`CAT`	`C`	2bp_deletion	CDS_variant	5	B5,B57,B9,B91,C50
`Chr7:5165771`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B5,B57,B9,C50
`Chr7:5165789`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B3,B38,B5,C17,D6
`Chr7:5165792`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B5,B57,B9,C50
`Chr7:5165810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,A16,A9,B31,C83
`Chr7:5165878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr7:5233349`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B4,B40,C4,C55
`Chr7:5233518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B3,B39,B5,C17,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772255.1

391 aa

196

391

EF-hand_7

EF-hand_5

PF13499 EF-hand_7 23-81 aa PF13202 EF-hand_5 25-45 aa PF13202 EF-hand_5 58-75 aa

XP_057772256.1

389 aa

194

389

EF-hand_8

EF-hand_5

PF13833 EF-hand_8 20-49 aa PF13202 EF-hand_5 25-45 aa PF13202 EF-hand_5 56-73 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772255.1`	Pfam	`PF13499`	EF-hand_7	Domain	23	81	3.5e-16	60.0	EF-hand domain pair
`XP_057772255.1`	Pfam	`PF13202`	EF-hand_5	Domain	25	45	5.9e-10	38.9	EF hand
`XP_057772255.1`	Pfam	`PF13202`	EF-hand_5	Domain	58	75	5.9e-10	38.9	EF hand
`XP_057772256.1`	Pfam	`PF13833`	EF-hand_8	Domain	20	49	6.3e-07	29.8	EF-hand domain pair
`XP_057772256.1`	Pfam	`PF13202`	EF-hand_5	Domain	25	45	5.8e-10	38.9	EF hand
`XP_057772256.1`	Pfam	`PF13202`	EF-hand_5	Domain	56	73	5.8e-10	38.9	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916273.1
TTTCATAGCTAGAGAGGAGAGAGAGATACATACAGAGAGAGAGATGGATGAAGTGAGAAAAGTTGCGAAGGCATACTACGACGGAGCAGCAGGAGCCGAGAAAGAGCTAGCTCGGAAACTTTTCCGATCACTCGACACAAACGGCGACGGGAAAGTGAGCCTGCGCGAGTACAAGAAGGCGATGCAGCACTCGTCTTTCTCCGGCAACGACATCTTCAAGGAGCTTGACGCCAACTGCGATGGAACCCTCGATTATGACG...

XM_057916272.1
TTTCATAGCTAGAGAGGAGAGAGAGATACATACAGAGAGAGAGATGGATGAAGTGAGAAAAGTTGCGAAGGCATACTACGACGGAGCAGCAGGAGCCGAGAAAGAGCTAGCTCGGAAACTTTTCCGATCACTCGACACAAACGGCGACGGGAAAGTGAGCCTGCGCGAGTACAAGAAGGCGATGCAGTTGCAGCACTCGTCTTTCTCCGGCAACGACATCTTCAAGGAGCTTGACGCCAACTGCGATGGAACCCTCGATT...

CDS

2 records

下载 CDS FASTA

LOC130991856
ATGGATGAAGTGAGAAAAGTTGCGAAGGCATACTACGACGGAGCAGCAGGAGCCGAGAAAGAGCTAGCTCGGAAACTTTTCCGATCACTCGACACAAACGGCGACGGGAAAGTGAGCCTGCGCGAGTACAAGAAGGCGATGCAGCACTCGTCTTTCTCCGGCAACGACATCTTCAAGGAGCTTGACGCCAACTGCGATGGAACCCTCGATTATGACGAGGTCTTGGCCCTTTATTACATGGACAAAGTTTCCGTGCCGAG...

LOC130991856
ATGGATGAAGTGAGAAAAGTTGCGAAGGCATACTACGACGGAGCAGCAGGAGCCGAGAAAGAGCTAGCTCGGAAACTTTTCCGATCACTCGACACAAACGGCGACGGGAAAGTGAGCCTGCGCGAGTACAAGAAGGCGATGCAGTTGCAGCACTCGTCTTTCTCCGGCAACGACATCTTCAAGGAGCTTGACGCCAACTGCGATGGAACCCTCGATTATGACGAGGTCTTGGCCCTTTATTACATGGACAAAGTTTCCGT...

Protein

2 records

下载 Protein FASTA

XP_057772255.1
MDEVRKVAKAYYDGAAGAEKELARKLFRSLDTNGDGKVSLREYKKAMQLQHSSFSGNDIFKELDANCDGTLDYDEVLALYYMDKVSVPRCRACKSLLLHSYFSCLLCQADASYYLCCDCYGGGKFKHRHSANKFVDTRAMLKLLDQILKQSQVISQARESDDDQFDLLQDAEDVDDQKLTSTMTQVMTFEEELEEEEEKGVEEDNNYDEDEDEAKEDKEEEDGAEDDEENGVGEDNNYEEGEEEKDEARENEEEDRAETD...

XP_057772256.1
MDEVRKVAKAYYDGAAGAEKELARKLFRSLDTNGDGKVSLREYKKAMQHSSFSGNDIFKELDANCDGTLDYDEVLALYYMDKVSVPRCRACKSLLLHSYFSCLLCQADASYYLCCDCYGGGKFKHRHSANKFVDTRAMLKLLDQILKQSQVISQARESDDDQFDLLQDAEDVDDQKLTSTMTQVMTFEEELEEEEEKGVEEDNNYDEDEDEAKEDKEEEDGAEDDEENGVGEDNNYEEGEEEKDEARENEEEDRAETDEK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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