当前解析结果
SmilChr07G000672| 统一新 Gene ID | SmilChr07G000672 |
|---|---|
| 名称 | SmilChr07G000672 |
| 描述 | chalcone synthase |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4573082 - 4575362 / - |
| NCBI Gene ID | LOC130991858 |
|---|---|
| GeneID | 130991858 |
| locus_tag | - |
| NCBI Name | LOC130991858 |
| 原始查询 | LOC130991858 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | chalcone synthase |
| 产物 | chalcone synthase |
| Arabidopsis | AT5G13930 (TT4)Chalcone and stilbene synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831241] identity=85.5; qcov=0.99; evalue=0; confidence=high |
| Rice | Os11g0530600 (CHS*)- identity=83.8; qcov=0.997; evalue=0; confidence=high |
| GO | GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups); GO:0030639 (polyketide biosynthetic process) |
| KEGG | smil00941 (Flavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04712 (Circadian rhythm - plant - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00195 (Chal_sti_synt_N); PF02797 (Chal_sti_synt_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991858 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057772257.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057772257.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057772257.1 |
| 4 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057772257.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057772257.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4573411 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B51 |
Chr7:4573483 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:4573558 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B14,C23,C64,C66 |
Chr7:4573579 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B73,C37,C51 |
Chr7:4573669 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr7:4573738 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B115,B82,C2,C60 |
Chr7:4573762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr7:4573779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr7:4573810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr7:4574109 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B22,B36,B45 |
Chr7:4574116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B22,B36,B45 |
Chr7:4574149 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,B45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772257.1PF00195
Chal_sti_synt_N 5-228 aa
PF02797
Chal_sti_synt_C 238-387 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772257.1 |
Pfam | PF00195 |
Chal_sti_synt_N | Domain | 5 | 228 | 6.8e-124 | 412.3 | Chalcone and stilbene synthases, N-terminal domain |
XP_057772257.1 |
Pfam | PF02797 |
Chal_sti_synt_C | Domain | 238 | 387 | 1.1e-72 | 243.7 | Chalcone and stilbene synthases, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。