Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000652

染色体: Chr07 坐标: 4391822-4394940 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000652
名称SmilChr07G000652
描述probable protein phosphatase 2C 34
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向4391822 - 4394940 / +

ID 对照

NCBI Gene IDLOC130991864
GeneID130991864
locus_tag-
NCBI NameLOC130991864
原始查询LOC130991864

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable protein phosphatase 2C 34
产物probable protein phosphatase 2C 34
ArabidopsisAT5G27930 (AT5G27930)
Protein phosphatase 2C family protein [Source:NCBI gene (formerly Entrezgene);Acc:832860]
identity=55.9; qcov=0.957; evalue=3.26e-140; confidence=high
RiceOs05g0358500 (OsPP2C48)
-
identity=51.7; qcov=0.968; evalue=3.61e-120; confidence=high
GOGO:0004722 (protein serine/threonine phosphatase activity); GO:0006470 (protein dephosphorylation)
KEGG-
PfamPF00481 (PP2C)
InterPro-
eggNOG-
NRGeneID:130991864

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 0.80000 XP_057772266.1
2 Nucleus 细胞核 0.40000 XP_057772266.1
3 Cytoplasm 细胞质 0.40000 XP_057772266.1
4 Chromosome 染色体 0.00000 XP_057772266.1
5 Centromere 着丝粒 0.00000 XP_057772266.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:4392560 G A EMS_canonical_SNV CDS_variant 4 B125,B63,B86,C12
Chr7:4392616 G A EMS_canonical_SNV CDS_variant 5 A8,B26,B85,B95,D11
Chr7:4392624 G A EMS_canonical_SNV CDS_variant 2 C64,C66
Chr7:4392653 G A EMS_canonical_SNV CDS_variant 1 B34
Chr7:4392679 C T EMS_canonical_SNV CDS_variant 5 A8,B26,B85,B95,D11
Chr7:4392989 C T EMS_canonical_SNV CDS_variant 2 B19,C1
Chr7:4393089 G A EMS_canonical_SNV CDS_variant 2 A10,C50
Chr7:4393136 G A EMS_canonical_SNV CDS_variant 4 B38,B39,B5,C17
Chr7:4393563 C T EMS_canonical_SNV CDS_variant 1 D6
Chr7:4393575 C T EMS_canonical_SNV CDS_variant 4 B104,B118,B34,B91
Chr7:4393614 G A EMS_canonical_SNV CDS_variant 3 C44,C59,D10
Chr7:4393733 G A EMS_canonical_SNV CDS_variant 1 C28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057772266.1
372 aa
N
1
186
372
PP2C
C
PF00481 PP2C 84-331 aa
XP_057772267.1
372 aa
N
1
186
372
PP2C
C
PF00481 PP2C 84-331 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772266.1 Pfam PF00481 PP2C Family 84 331 2.4e-44 152.6 Protein phosphatase 2C
XP_057772267.1 Pfam PF00481 PP2C Family 84 331 2.4e-44 152.6 Protein phosphatase 2C

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057916284.1
CAAATGAAATGGTGAAGTTGGAATATCATATTATATATACTTGTACTAAAAAAAAAAAGAAAAAACATCATATTGTGCATATGTATATAATACAAAAAAATTATCTGAATTATATTTATTTATTTTCGGATAATTAAATTAATCAGTCGACGCCGAGCTTGGATTTGTGGGGTTTAACGTGCGCATGCATATAACCATGTATATGTTTTTATATACTCGCACACAAGACTTAATGAACTTTATTTAAGCCTTCTGAATTA...
XM_057916283.1
TGTTTTTCTATCTCATTTGTGAATGAAAACTTGCTTCTTTAATCTGTCATAAAATATATAATTATATTTTGCTTCAAATATTTGTTATGACAAATGGATCTCAAGATTTTTCATAGGATTCAAGAATTTTGAATATTGCAAGAATTGAGCCTGCCATGAATGCTTTCAATCCCTGCAGATTCCTTTTGCTTAAAGATTCAATTTTTATATGTGTGTTTGTGTGTGTGTGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGA...

CDS

2 records

下载 CDS FASTA
LOC130991864
ATGGTGCAGCTATCCAACATATTCAACACACTATCAAAAAACATATCAAATAAAACTGCAAAGAAGAGCAGGCTTAGCACTGGAGGGGAGGCTGCAGTTGTTCTAGCAAAGGAAGCAAAGAGGAATGAGCTGCTGCTAACCTCTTCTGGTTTCATCAATGGCAGAAACAACGAAACCTTAGCTTCTAGCCACACGAAACGAGGCAAAAAGGGACTCAATCAGGATTGCTTCCTTGTGTGGGAGGAGTTTGGATGCCAAGA...
LOC130991864
ATGGTGCAGCTATCCAACATATTCAACACACTATCAAAAAACATATCAAATAAAACTGCAAAGAAGAGCAGGCTTAGCACTGGAGGGGAGGCTGCAGTTGTTCTAGCAAAGGAAGCAAAGAGGAATGAGCTGCTGCTAACCTCTTCTGGTTTCATCAATGGCAGAAACAACGAAACCTTAGCTTCTAGCCACACGAAACGAGGCAAAAAGGGACTCAATCAGGATTGCTTCCTTGTGTGGGAGGAGTTTGGATGCCAAGA...

Protein

2 records

下载 Protein FASTA
XP_057772266.1
MVQLSNIFNTLSKNISNKTAKKSRLSTGGEAAVVLAKEAKRNELLLTSSGFINGRNNETLASSHTKRGKKGLNQDCFLVWEEFGCQEDMDFCGVFDGHGAWGHFVSKTVRELLPSLLLCSWQEAVELNACDLDCSLESKKKQIQFDVWEQSFYKACAAVDQELEQCPAIDSFYSGCTSLALVRQGDLMIVANVGDSRAVLATTSDEGNLVATQLTTDHKPNLPYERKRIEKSGGTTYSCPDEPGVHRVWLPNGQAVRGPG...
XP_057772267.1
MVQLSNIFNTLSKNISNKTAKKSRLSTGGEAAVVLAKEAKRNELLLTSSGFINGRNNETLASSHTKRGKKGLNQDCFLVWEEFGCQEDMDFCGVFDGHGAWGHFVSKTVRELLPSLLLCSWQEAVELNACDLDCSLESKKKQIQFDVWEQSFYKACAAVDQELEQCPAIDSFYSGCTSLALVRQGDLMIVANVGDSRAVLATTSDEGNLVATQLTTDHKPNLPYERKRIEKSGGTTYSCPDEPGVHRVWLPNGQAVRGPG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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