Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003310`

染色体: Chr01 坐标: 51785927-51789246 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003310`
名称	SmilChr01G003310
描述	glycosyltransferase BC10-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	51785927 - 51789246 / `-`

ID 对照

NCBI Gene ID	`LOC130991883`
GeneID	`130991883`
locus_tag	`-`
NCBI Name	`LOC130991883`
原始查询	`LOC130991883`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycosyltransferase BC10-like
产物	glycosyltransferase BC10-like
Arabidopsis	`AT5G11730` (AT5G11730) Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831045] identity=62; qcov=0.977; evalue=1.42e-173; confidence=high
Rice	`Os03g0731050` - identity=66.2; qcov=0.802; evalue=7.49e-161; confidence=high
GO	GO:0016020 (membrane); GO:0016757 (glycosyltransferase activity)
KEGG	-
Pfam	PF02485 (Branch)
InterPro	-
eggNOG	-
NR	GeneID:130991883

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057772315.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057772315.1`
3	Nucleus	细胞核	0.00000	`XP_057772315.1`
4	Chromosome	染色体	0.00000	`XP_057772315.1`
5	Centromere	着丝粒	0.00000	`XP_057772315.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:51786130`	`A`	`AT`	1bp_insertion	frameshift_variant	1	A24
`Chr1:51786130`	`A`	`AT`	1bp_insertion	CDS_variant	1	A24
`Chr1:51786367`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,C61,C78
`Chr1:51786368`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,B123
`Chr1:51786411`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr1:51786536`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C72,C73
`Chr1:51786632`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C60,C72,C73,D10
`Chr1:51786697`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr1:51786734`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:51787770`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,C61,C78
`Chr1:51787806`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C26,C5
`Chr1:51787821`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772315.1

388 aa

194

388

Branch

PF02485 Branch 121-347 aa

XP_057772323.1

388 aa

194

388

Branch

PF02485 Branch 121-347 aa

XP_057772331.1

388 aa

194

388

Branch

PF02485 Branch 121-347 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772315.1`	Pfam	`PF02485`	Branch	Family	121	347	9.1e-84	281.6	Core-2/I-Branching enzyme
`XP_057772323.1`	Pfam	`PF02485`	Branch	Family	121	347	9.1e-84	281.6	Core-2/I-Branching enzyme
`XP_057772331.1`	Pfam	`PF02485`	Branch	Family	121	347	9.1e-84	281.6	Core-2/I-Branching enzyme

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057916340.1
GTTTTCCAAAATAAAATAGGAGTAAAACATTATTCTCTGTCGTACGCAATGTGAACTCAATAGTGACAAAATCAAAAGTGTTTGCGGAGAAATAAATAAATGCAAAATCTTTGTTCCCAAAAATTCAAATTCTCGACAAATCACAAAACAACAGATCAATATCTCCTAGACTCCTAGCTTCTTCTTCTTCCACTGTTTCTCTCTCTCTCTCTCATATTCAATTATTTCCAGAACTGTCGGACATCTCTCATCAATATGAG...

XM_057916332.1
CAATGTGAACTCAATAGTGACAAAATCAAAAGTGTTTGCGGAGAAATAAATAAATGCAAAATCTTTGTTCCCAAAAATTCAAATTCTCGACAAATCACAAAACAACAGATCAATATCTCCTAGACTCCTAGCTTCTTCTTCTTCCACTGTTTCTCTCTCTCTCTCTCATATTCAATTATTTCCAGAACTGTCGGACATCTCTCATCAATATGAGTTTCGTGGAATGGGTTCGCTAGAGCCCATGAATTCTGCGCTTTTGT...

CDS

3 records

下载 CDS FASTA

LOC130991883
ATGCTAGCAAGAGTGGGGAGCTCTGGTTTGTTGGAGGAAGCCAAAGAACCTAGTGTTAGAACCATAAGCCAATCTCACCGCCCTTTCCCACTTAGATTACTTCAGTTTCTACTGCTCTTACTCGGACTAGGCATACTCGTCTCGTTTCTCAGCATGTACGCCAGCCGGCATCTCAAGGTGCAGAACGATGTTGCTGTGATTCCCTCGAGATTCCAGCCCTGTGTTGAGGAGCCATTGAGTATACAAAGCTGGATTAGACC...

Protein

3 records

下载 Protein FASTA

XP_057772315.1
MLARVGSSGLLEEAKEPSVRTISQSHRPFPLRLLQFLLLLLGLGILVSFLSMYASRHLKVQNDVAVIPSRFQPCVEEPLSIQSWIRPPAYLLHKMNDTELFWRASFVPKIKQYPFKRTPKIAFMFLTRGHLPLAPLWERFFKGNEKLYSIYVHSLPSYQPDFQGSSVFYGRHIPSQVVEWGMMSMCDAERRLLANALLDISNEWFVLLSEACIPLQNFSIVYRYISRSRFSFMGAFDEPGPFGRGRYNRNMSPLINLTNW...

XP_057772323.1
MLARVGSSGLLEEAKEPSVRTISQSHRPFPLRLLQFLLLLLGLGILVSFLSMYASRHLKVQNDVAVIPSRFQPCVEEPLSIQSWIRPPAYLLHKMNDTELFWRASFVPKIKQYPFKRTPKIAFMFLTRGHLPLAPLWERFFKGNEKLYSIYVHSLPSYQPDFQGSSVFYGRHIPSQVVEWGMMSMCDAERRLLANALLDISNEWFVLLSEACIPLQNFSIVYRYISRSRFSFMGAFDEPGPFGRGRYNRNMSPLINLTNW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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