Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000772`

染色体: Chr07 坐标: 5399005-5402134 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000772`
名称	SmilChr07G000772
描述	uncharacterized SmilChr07G000772
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	5399005 - 5402134 / `-`

ID 对照

NCBI Gene ID	`LOC130991897`
GeneID	`130991897`
locus_tag	`-`
NCBI Name	`LOC130991897`
原始查询	`LOC130991897`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:828275]; symbol=AT4G21865; hit=AT4G21865; species=arabidopsis; confidence=low
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:828275]; symbol=AT4G21865; hit=AT4G21865; species=arabidopsis; confidence=low
Arabidopsis	`AT4G21865` (AT4G21865) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:828275] identity=33.9; qcov=0.554; evalue=1.84e-07; confidence=low
Rice	`-` -
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130991897

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057772332.1`
2	Spindle	Spindle	1.00000	`XP_057772332.1`
3	Spindle pole	Spindle pole	1.00000	`XP_057772332.1`
4	Centrosome	中心体	0.80000	`XP_057772333.1`
5	Chromosome	染色体	0.40000	`XP_057772333.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:5399421`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr7:5399424`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,B39,B65,C46
`Chr7:5399463`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B108
`Chr7:5399463`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr7:5399482`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,C12,C50,D10
`Chr7:5400239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B51,B77
`Chr7:5400288`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,C1
`Chr7:5400386`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,B91
`Chr7:5400401`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,B2,B72,B78,C8
`Chr7:5401698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,B81,D10
`Chr7:5401705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr7:5401720`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916350.1
TACAATACGACTCTCGTGTAAGTCATTAATCATTCAAAACTCTGAAAAGACACGCGACATCAAAAACAACTCCTCCATCTGGCCTTCTTTTCTTTTTTTTGAAGAATCTTTTATTCAAACCGTTGAAATCATCACACCTTTAAAACATGTTCCATTTTCACCTCTGATTCCACGATTCTCTTATAGTAAAAGTTATTGTTTGCAAGATTTCTGTAGCTATGACTCAATCTGGGAAGAAGCATCTGCAGGAAAACATGTAT...

XM_057916349.1
ATTCAAAACTCTGAAAAGACACGCGACATCAAAAACAACTCCTCCATCTGGCCTTCTTTTCTTTTTTTTGAAGAATCTTTTATTCAAACCGTTGAAATCATCACACCTTTAAAACATGTTCCATTTTCACCTCTGATTCCACGATTCTCTTATAGTAAAAGTTATTGTTTGCAAGATTTCTGTAGCTATGACTCAATCTGGGAAGAAGCATCTGCAGGAAAACAAAGTGTATCCAAAAGTGAAGGTGAGGGTACAGAGAG...

CDS

2 records

下载 CDS FASTA

LOC130991897
ATGACTCAATCTGGGAAGAAGCATCTGCAGGAAAACATGTATCCAAAAGTGAAGGTGAGGGTACAGAGAGAAGATGCTGACCAATATGTTTATGAGAAGAATTCCTTGCAGTCTTTGAAGGCTTTTGAATGGCTATCTCTCAACGATTCCTCTTCTTCAGATGATTCCCCAAGGCCAGTTGTGAGGGTTCCCCACTCTTATGTCCCTCTATCACCTCCTCCGAGCTTCTACAGATCCAAAGAGGAAACGAACAAAAAGAA...

LOC130991897
ATGACTCAATCTGGGAAGAAGCATCTGCAGGAAAACAAAGTGTATCCAAAAGTGAAGGTGAGGGTACAGAGAGAAGATGCTGACCAATATGTTTATGAGAAGAATTCCTTGCAGTCTTTGAAGGCTTTTGAATGGCTATCTCTCAACGATTCCTCTTCTTCAGATGATTCCCCAAGGCCAGTTGTGAGGGTTCCCCACTCTTATGTCCCTCTATCACCTCCTCCGAGCTTCTACAGATCCAAAGAGGAAACGAACAAAAA...

Protein

2 records

下载 Protein FASTA

XP_057772332.1
MTQSGKKHLQENKVYPKVKVRVQREDADQYVYEKNSLQSLKAFEWLSLNDSSSSDDSPRPVVRVPHSYVPLSPPPSFYRSKEETNKKNADVKENQKSVRATSAPRPRAVLSSPDNDGMIGQRTPTRAQIQPSPGPKNRVASQNRHTLCKIFPKSTTAEGTPRKTHAKESSELKNDIRAKGRVTSLTDSRTRAAAAQRKKTAPS

XP_057772333.1
MTQSGKKHLQENMYPKVKVRVQREDADQYVYEKNSLQSLKAFEWLSLNDSSSSDDSPRPVVRVPHSYVPLSPPPSFYRSKEETNKKNADVKENQKSVRATSAPRPRAVLSSPDNDGMIGQRTPTRAQIQPSPGPKNRVASQNRHTLCKIFPKSTTAEGTPRKTHAKESSELKNDIRAKGRVTSLTDSRTRAAAAQRKKTAPS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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