Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000626`

染色体: Chr07 坐标: 4229236-4230229 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000626`
名称	SmilChr07G000626
描述	uncharacterized SmilChr07G000626
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4229236 - 4230229 / `-`

ID 对照

NCBI Gene ID	`LOC130991900`
GeneID	`130991900`
locus_tag	`-`
NCBI Name	`LOC130991900`
原始查询	`LOC130991900`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:827257]; symbol=AT4G15770; hit=AT4G15770; species=arabidopsis; confidence=high
产物	RNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:827257]; symbol=AT4G15770; hit=AT4G15770; species=arabidopsis; confidence=high
Arabidopsis	`AT4G15770` (AT4G15770) RNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:827257] identity=76.6; qcov=1; evalue=1.15e-102; confidence=high
Rice	`Os07g0670600` (P0470D12.109) - identity=62.2; qcov=1; evalue=3.61e-83; confidence=high
GO	GO:0003723 (RNA binding); GO:0005634 (nucleus); GO:0005730 (nucleolus); GO:0030687 (preribosome, large subunit precursor); GO:0042255 (ribosome assembly); GO:0042273 (ribosomal large subunit biogenesis)
KEGG	-
Pfam	PF01472 (PUA); PF03657 (UPF0113); PF17833 (pre-PUA_NIP7)
InterPro	-
eggNOG	-
NR	GeneID:130991900

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleolus	核仁	1.00000	`XP_057772336.1`
2	Nucleus	细胞核	0.80000	`XP_057772336.1`
3	Cytoplasm	细胞质	0.60000	`XP_057772336.1`
4	Chromosome	染色体	0.00000	`XP_057772336.1`
5	Centromere	着丝粒	0.00000	`XP_057772336.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4229639`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:4229684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B13,B52,B98,C55,C63
`Chr7:4229696`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr7:4229756`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B108,C14,C29
`Chr7:4229774`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B18
`Chr7:4229774`	`GC`	`G`	1bp_deletion	CDS_variant	1	B18
`Chr7:4229930`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C81
`Chr7:4229930`	`GC`	`G`	1bp_deletion	CDS_variant	1	C81
`Chr7:4230044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772336.1

188 aa

188

pre-PUA_NIP7

UPF0113

PUA

PF17833 pre-PUA_NIP7 1-92 aa PF03657 UPF0113 104-185 aa PF01472 PUA 105-172 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772336.1`	Pfam	`PF17833`	pre-PUA_NIP7	Domain	1	92	6.8e-22	78.3	NIP7/UPF0113, pre-PUA domain
`XP_057772336.1`	Pfam	`PF03657`	UPF0113	Domain	104	185	3.1e-25	89.1	UPF0113 PUA domain
`XP_057772336.1`	Pfam	`PF01472`	PUA	Domain	105	172	9.7e-06	26.2	PUA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916353.1
GAAAGGCCCAATACAAATTATAAGTCCATTAAGGCCCAATATAAATCACAAGCCCATAGTGGCCCAAAACGACCTCTTCTCCCTAAAACCTTAACCAAAGGACTGCTGCAAACATAAACCCTGCCTAAAAAAATCCCCATTTCCCAAACCCTAATTGAACAATCGCCAATCGCCATGAGACCTCTCGACGAGAACGAGACGACCCTCGTCTTCAACAAGCTCCACAAATTCGTCGGCAACAACCTCAAGAACATCGTCCT...

CDS

1 records

下载 CDS FASTA

LOC130991900
ATGAGACCTCTCGACGAGAACGAGACGACCCTCGTCTTCAACAAGCTCCACAAATTCGTCGGCAACAACCTCAAGAACATCGTCCTCGAAGCGCAGGCCCACGAGGGGCCCGAGCCGAACCCTGGCCGCTACTGCTTCCGCATGCAGAAGAATCGCGTCTACTACGTCTCCGAGTCGCTCGTCAAGCGCGCCACCAACATCAAGCGCGACAAGCTCGTTGCGCTGGGAACGCAGATCGGTAAATTCACCAAGGGCGGCAA...

Protein

1 records

下载 Protein FASTA

XP_057772336.1
MRPLDENETTLVFNKLHKFVGNNLKNIVLEAQAHEGPEPNPGRYCFRMQKNRVYYVSESLVKRATNIKRDKLVALGTQIGKFTKGGKFHLTVQCLNLLAANAKHKVWLKPTAEMSFLYGNSVLKGGVGRITESIQVNDGVVVFSMSDVPLGFGDAAKSTVDCRKMDPNGIVVHRHADIGEYLRMEDEL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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