Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000809`

染色体: Chr07 坐标: 5702149-5707036 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000809`
名称	SmilChr07G000809
描述	serine/threonine-protein phosphatase PP1 isozyme 2-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	5702149 - 5707036 / `-`

ID 对照

NCBI Gene ID	`LOC130991977`
GeneID	`130991977`
locus_tag	`-`
NCBI Name	`LOC130991977`
原始查询	`LOC130991977`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein phosphatase PP1 isozyme 2-like
产物	serine/threonine-protein phosphatase PP1 isozyme 2-like
Arabidopsis	`AT5G59160` (TOPP2) type one serine/threonine protein phosphatase 2 [Source:NCBI gene (formerly Entrezgene);Acc:836034] identity=85.9; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0268000` (OsPP1) - identity=89; qcov=0.968; evalue=0; confidence=high
GO	GO:0004722 (protein serine/threonine phosphatase activity); GO:0005634 (nucleus); GO:0005737 (cytoplasm)
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00149 (Metallophos); PF16891 (STPPase_N)
InterPro	-
eggNOG	-
NR	GeneID:130991977

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057772395.1`
2	Cytoplasm	细胞质	1.00000	`XP_057772395.1`
3	Cytosol	细胞质基质	1.00000	`XP_057772395.1`
4	Midbody	Midbody	0.20000	`XP_057772396.1`
5	Chromosome	染色体	0.00000	`XP_057772395.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:5703722`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr7:5703811`	`GA`	`G`	1bp_deletion	frameshift_variant	110	A11,A14,A18,A19,A21,A5,A9,B1,B10,B101,B107,B108,B109,B110,B111,B112,B114,B118,B119,B12,B120,B123,B13,B132,B137,B140,B16,B18,B19,B2,B23,B26,B29,B31,B32,B33,B34,B35,B37,B38,B39,B40,B44,B46,B48,B5,B52,B57,B59,B65,B66,B67,B68,B69,B74,B77,B78,B84,B85,B91,B93,B95,B97,B98,B99,C11,C16,C17,C23,C24,C26,C28,C30,C32,C34,C35,C36,C37,C38,C39,C4,C40,C46,C48,C5,C51,C52,C54,C60,C61,C64,C65,C66,C68,C69,C7,C71,C75,C78,C80,C81,C85,C9,D1,D10,D11,D4,D5,D7,D9
`Chr7:5703817`	`G`	`GA`	1bp_insertion	frameshift_variant	19	A11,B109,B16,B29,B32,B33,B59,B93,C11,C28,C30,C61,C64,C66,C69,C75,C81,C85,D7
`Chr7:5703828`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr7:5703851`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr7:5703860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772395.1

338 aa

169

338

STPPase_N

Metallophos

PF16891 STPPase_N 13-60 aa PF00149 Metallophos 62-253 aa

XP_057772396.1

309 aa

154

309

STPPase_N

Metallophos

PF16891 STPPase_N 13-60 aa PF00149 Metallophos 62-255 aa

XP_057772397.1

309 aa

154

309

STPPase_N

Metallophos

PF16891 STPPase_N 13-60 aa PF00149 Metallophos 62-255 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772395.1`	Pfam	`PF16891`	STPPase_N	Family	13	60	5.2e-22	78.8	Serine-threonine protein phosphatase N-terminal domain
`XP_057772395.1`	Pfam	`PF00149`	Metallophos	Domain	62	253	9.1e-49	167.3	Calcineurin-like phosphoesterase
`XP_057772396.1`	Pfam	`PF16891`	STPPase_N	Family	13	60	4.7e-22	78.9	Serine-threonine protein phosphatase N-terminal domain
`XP_057772396.1`	Pfam	`PF00149`	Metallophos	Domain	62	255	3.3e-49	168.7	Calcineurin-like phosphoesterase
`XP_057772397.1`	Pfam	`PF16891`	STPPase_N	Family	13	60	4.7e-22	78.9	Serine-threonine protein phosphatase N-terminal domain
`XP_057772397.1`	Pfam	`PF00149`	Metallophos	Domain	62	255	3.3e-49	168.7	Calcineurin-like phosphoesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057916413.1
GAGAGTAAAAAAATTCGTAAAAAATCACTTCTTTCTTATTGTATTCGTTCAAGCCTCCTTTTATTTTTCTTTATATTTTTAACACAGTCAAGCTTTAAAACTTTGAAACGCGGAGCCTTGGATTTTTTTTATATACATATTGATATCGACATTGAAATGAAATTAAACGAAAACGGAATTAATTAAGTTGGAAAGACATCCCTAAATTTTGAATTGGGGAGCAAAAGCAGGCAGTTGAGAGAGAGAAGAGGAAGAAGGGG...

XM_057916414.1
ATTCGTTCAAGCCTCCTTTTATTTTTCTTTATATTTTTAACACAGTCAAGCTTTAAAACTTTGAAACGCGGAGCCTTGGATTTTTTTTATATACATATTGATATCGACATTGAAATGAAATTAAACGAAAACGGAATTAATTAAGTTGGAAAGACATCCCTAAATTTTGAATTGGGGAGCAAAAGCAGGCAGTTGAGAGAGAGAAGAGGAAGAAGGGGAAAGTGGAGGGGTCAAGTCCAAAAATCTCAATACACAACCAC...

CDS

3 records

下载 CDS FASTA

LOC130991977
ATGGCGGCGAATGGGCAGGGGATAGAGCCTGCCTTGTTGGATGACATAATCAATCGGTTGCTGGAGTTCCGCAATGCGCGGACTGTGCGTCAGGTGCAGCTCTCCGAGAACGAGATCCGTGCTCTCTGTACTACGTCGCGGGAAATCTTCCTCTCTCAGCCTAATCTTCTCGAGCTAGAAGCTCCGATAAAGATATGCGGTGACATTCATGGGCAATATGGGGATCTTCTAAGGCTATTCGAATATGGGGGTTTTCCGCC...

Protein

3 records

下载 Protein FASTA

XP_057772395.1
MAANGQGIEPALLDDIINRLLEFRNARTVRQVQLSENEIRALCTTSREIFLSQPNLLELEAPIKICGDIHGQYGDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAALIDDKILCMHGGLSPDLTNLDQIRNLPRPSDVPDSGLLCDLLWSDPSREIKGWGMNDRGVSYTFGADKVAEFLMQHDMDLVCRAHQALLFLFL...

XP_057772396.1
MAANGQGIEPALLDDIINRLLEFRNARTVRQVQLSENEIRALCTTSREIFLSQPNLLELEAPIKICGDIHGQYGDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAALIDDKILCMHGGLSPDLTNLDQIRNLPRPSDVPDSGLLCDLLWSDPSREIKGWGMNDRGVSYTFGADKVAEFLMQHDMDLVCRAHQVVEDGYE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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