Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000810

染色体: Chr07 坐标: 5710930-5714965 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000810
名称SmilChr07G000810
描述uncharacterized SmilChr07G000810
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向5710930 - 5714965 / -

ID 对照

NCBI Gene IDLOC130991978
GeneID130991978
locus_tag-
NCBI NameLOC130991978
原始查询LOC130991978

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述myosin heavy chain-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836039]; symbol=AT5G59210; hit=AT5G59210; species=arabidopsis; confidence=high
产物myosin heavy chain-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836039]; symbol=AT5G59210; hit=AT5G59210; species=arabidopsis; confidence=high
ArabidopsisAT5G59210 (AT5G59210)
myosin heavy chain-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836039]
identity=63; qcov=1; evalue=0; confidence=high
RiceOs03g0268100
-
identity=50.4; qcov=1.03; evalue=2.29e-138; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130991978

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057772399.1
2 Trans-golgi network Trans-golgi network 0.60000 XP_057772399.1
3 Cytoplasm 细胞质 0.40000 XP_057772399.1
4 Centrosome 中心体 0.40000 XP_057772400.1
5 Cytoskeleton 细胞骨架 0.40000 XP_057772400.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:5711185 C T EMS_canonical_SNV CDS_variant 4 B117,B122,B131,C2
Chr7:5711237 A AGC 2bp_insertion frameshift_variant 1 C7
Chr7:5711237 A AGC 2bp_insertion CDS_variant 1 C7
Chr7:5711243 C CAT 2bp_insertion frameshift_variant 171 A1,A10,A11,A13,A14,A16,A18,A20,A22,A23,A24,A25,A4,A7,A9,B10,B101,B103,B104,B105,B108,B110,B111,B113,B114,B117,B119,B12,B120,B121,B122,B123,B124,B126,B128,B129,B13,B130,B131,B132,B133,B134,B136,B139,B14,B15,B16,B18,B19,B21,B23,B24,B26,B30,B32,B36,B38,B39,B40,B41,B42,B43,B44,B48,B51,B52,B54,B55,B56,B58,B6,B60,B62,B63,B64,B65,B66,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B79,B8,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B92,B93,B95,B96,B97,B98,B99,C1,C10,C11,C12,C14,C18,C19,C2,C21,C22,C24,C25,C26,C27,C28,C3,C32,C34,C36,C37,C39,C41,C43,C45,C47,C49,C5,C50,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C64,C65,C66,C67,C68,C69,C70,C72,C73,C74,C76,C79,C80,C82,C83,C85,C86,C87,C9,D1,D10,D11,D3,D4,D7,D9
Chr7:5711246 C T EMS_canonical_SNV CDS_variant 3 B117,B91,C52
Chr7:5711267 A ATG 2bp_insertion frameshift_variant 9 B128,B129,B30,B82,C3,C41,C61,C9,D1
Chr7:5711275 ACG A 2bp_deletion frameshift_variant 21 B128,B129,B30,B6,B63,B70,B77,B82,B83,B84,C11,C3,C41,C47,C53,C56,C61,C67,C69,C74,D1
Chr7:5712136 G A EMS_canonical_SNV CDS_variant 3 A8,B122,B81
Chr7:5712629 C T EMS_canonical_SNV CDS_variant 1 B44
Chr7:5713190 G A EMS_canonical_SNV CDS_variant 1 C7
Chr7:5713196 G A EMS_canonical_SNV CDS_variant 1 C4
Chr7:5713417 C T EMS_canonical_SNV CDS_variant 5 A18,B35,B37,C23,C85

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057916416.1
ACGGTGACGTGGAGAACGAACAATTTCTCCTTTGGAGATACAACGGCCCATCAGAAGCCCAAAATCTCACAGCTCTCTCTCCCAATCGACGGTTCGTCGGCCGGCGGCGGAAAGAACATTCTCTCTATCCTCTCTTCCGCGGGAATCGCTTGTTTATGAAAAATTAAGTTAGAGATGGAGGCTCGTCATGCATCTCTCGGTCGACGAACGCTGGAAGACATTCGACAGAAGCGCGCAGCAGCAGAGAGAATGAGCAAGAC...
XM_057916417.1
GGTGACGTGGAGAACGAACAATTTCTCCTTTGGAGATACAACGGCCCATCAGAAGCCCAAAATCTCACAGCTCTCTCTCCCAATCGACGGTTCGTCGGCCGGCGGCGGAAAGAACATTCTCTCTATCCTCTCTTCCGCGGGAATCGCTTGTTTATGAAAAATTAAGTTAGAGATGGAGGCTCGTCATGCATCTCTCGGTCGACGAACGCTGGAAGACATTCGACAGAAGCGCGCAGCAGCAGAGAGAATGAGCAAGACCT...

CDS

2 records

下载 CDS FASTA
LOC130991978
ATGGAGGCTCGTCATGCATCTCTCGGTCGACGAACGCTGGAAGACATTCGACAGAAGCGCGCAGCAGCAGAGAGAATGAGCAAGACCTCATCCGGACCAGATCTCGCCAAAAACCCTACCGATGCTACTGGTATGAAGAAATCGGAAAGTGCAAATCGACTTACGGAGAATGATATCAGTGGCTTGTTATCTCAATTGAAAGACATGCAACAGAGGAATACAGAGCTCGAGGAAGCGAACAAGGAATTCACCTCATTGCT...
LOC130991978
ATGGAGGCTCGTCATGCATCTCTCGGTCGACGAACGCTGGAAGACATTCGACAGAAGCGCGCAGCAGCAGAGAGAATGAGCAAGACCTCATCCGGACCAGATCTCGCCAAAAACCCTACCGATGCTACTGGTATGAAGAAATCGGAAAGTGCAAATCGACTTACGGAGAATGATATCAGTGGCTTGTTATCTCAATTGAAAGACATGCAACAGAGGAATACAGAGCTCGAGGAAGCGAACAAGGAATTCACCTCATTGCT...

Protein

2 records

下载 Protein FASTA
XP_057772399.1
MEARHASLGRRTLEDIRQKRAAAERMSKTSSGPDLAKNPTDATGMKKSESANRLTENDISGLLSQLKDMQQRNTELEEANKEFTSLLQKKEVENSMMQRRLNDLEQNTVPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKRRIKEAEEEQYRAEEDAALLRAELNALQQQAMHNPSGGVNATGYSVDQMQVMEKELSNLRSKLEQEAILRQQEHQVLVEEQARTSALIIQKQELEEKLASASKRISENETEQGHQRAFT...
XP_057772400.1
MEARHASLGRRTLEDIRQKRAAAERMSKTSSGPDLAKNPTDATGMKKSESANRLTENDISGLLSQLKDMQQRNTELEEANKEFTSLLQKKEVENSMMQRRLNDLEQNTVPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKRRIKEAEEEQYRAEEDAALLRAELNALQQQAMHNPSGGVNATGYSVDQMQVMEKELSNLRSKLEQEAILRQQEHQVLVEEQARTSALIIQKQELEEKLASASKRISENETEQGHQRAFT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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