Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000816

染色体: Chr07 坐标: 5751069-5755801 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000816
名称SmilChr07G000816
描述ATP-dependent zinc metalloprotease FTSH 10, mitochondrial-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向5751069 - 5755801 / -

ID 对照

NCBI Gene IDLOC130991984
GeneID130991984
locus_tag-
NCBI NameLOC130991984
原始查询LOC130991984

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ATP-dependent zinc metalloprotease FTSH 10, mitochondrial-like
产物ATP-dependent zinc metalloprotease FTSH 10%2C mitochondrial-like
ArabidopsisAT1G07510 (ftsh10)
FTSH protease 10 [Source:NCBI gene (formerly Entrezgene);Acc:837265]
identity=70.6; qcov=1.01; evalue=0; confidence=high
RiceOs05g0458400 (OsFtsH8)
-
identity=74.9; qcov=0.939; evalue=0; confidence=high
GOGO:0004176 (ATP-dependent peptidase activity); GO:0004222 (metalloendopeptidase activity); GO:0005524 (ATP binding); GO:0005745 (m-AAA complex); GO:0008270 (zinc ion binding); GO:0009535 (chloroplast thylakoid membrane); GO:0016887 (ATP hydrolysis activity); GO:0034982 (mitochondrial protein processing); GO:0065003 (protein-containing complex assembly)
KEGG-
PfamPF00004 (AAA); PF01434 (Peptidase_M41); PF06480 (FtsH_ext); PF17862 (AAA_lid_3)
InterPro-
eggNOG-
NRGeneID:130991984

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057772407.1
2 Mitochondrion membrane 线粒体膜 1.00000 XP_057772407.1
3 Mitochondrion inner membrane 线粒体内膜 1.00000 XP_057772407.1
4 Nucleus 细胞核 0.00000 XP_057772407.1
5 Chromosome 染色体 0.00000 XP_057772407.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:5751507 G A EMS_canonical_SNV CDS_variant 1 B93
Chr7:5751674 G A EMS_canonical_SNV CDS_variant 2 B123,D10
Chr7:5752565 G A EMS_canonical_SNV CDS_variant 3 A19,C7,D11
Chr7:5753126 C T EMS_canonical_SNV CDS_variant 1 C37
Chr7:5753473 C T EMS_canonical_SNV CDS_variant 2 B74,D11
Chr7:5755239 C T EMS_canonical_SNV CDS_variant 1 B133
Chr7:5755344 G A EMS_canonical_SNV CDS_variant 1 C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057772407.1
823 aa
N
1
412
823
FtsH_ext
AAA
AAA_lid_3
Peptidase_M41
C
PF06480 FtsH_ext 148-267 aa PF00004 AAA 378-510 aa PF17862 AAA_lid_3 540-578 aa PF01434 Peptidase_M41 593-775 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772407.1 Pfam PF06480 FtsH_ext Family 148 267 9.1e-13 49.0 FtsH Extracellular
XP_057772407.1 Pfam PF00004 AAA Domain 378 510 5.7e-43 147.2 ATPase family associated with various cellular activities (AAA)
XP_057772407.1 Pfam PF17862 AAA_lid_3 Domain 540 578 8.1e-13 48.4 AAA+ lid domain
XP_057772407.1 Pfam PF01434 Peptidase_M41 Domain 593 775 3.2e-66 223.6 Peptidase family M41

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057916424.1
TCATCTATTAAAATCATTTTCTACCCCCAAAATAATTAATTATTCCTTTTAATAATTTCGGGCAATCAGAATATCATCAAAATCGAAAAAACCCTACGCATAACATCCAATTCCAATTCAATCTCATTTCATCACACACAGCTCACTGAGTTTCAGAATAATTCAAGGAAGAAGCGGAGCCAAAAACTGACGCGAATCGTTAAAATTGTATAATGATCTATTCGAGAATCGGAGCTTCGCTATCTCGCTCCTCTCGTTAC...

CDS

1 records

下载 CDS FASTA
LOC130991984
ATGATCTATTCGAGAATCGGAGCTTCGCTATCTCGCTCCTCTCGTTACAGGAATGTGATTAGCGGAGCTAGTAAGGGGAGGGCCCTCATTTGTAGTAAAGAGAGCTTGGGGGATCCGAGTTCAGATAGTTTGAATGGCTATCTCAATCAGTTCGAGGGAAAATTAGAGTTTCCGAGAGGGTATTTAGCTGCTGCTGGAGCTCATAAAGGATCGACTTCTAGGGCTTCTTTATCAGATTTTAAATACCTCGCTGGAAATCC...

Protein

1 records

下载 Protein FASTA
XP_057772407.1
MIYSRIGASLSRSSRYRNVISGASKGRALICSKESLGDPSSDSLNGYLNQFEGKLEFPRGYLAAAGAHKGSTSRASLSDFKYLAGNPGIYRFFSSKAPKKKNYENFYPKDKKEIPKKSEQKSESKEEKKKSEDGDSNTMTFTMDLQNIIASLLVIGLFSSAMSSKPNGEKQISFQEFKNKLLEPGLVDHIVISNKSVAKVYVRSSPQNLSSSPDSSEVSDFDTPVSDTQPKAKSSQYKYYFNIGSVETFEEKLEEAQEAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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