Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003319`

染色体: Chr01 坐标: 51907762-51910002 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003319`
名称	SmilChr01G003319
描述	uncharacterized SmilChr01G003319
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	51907762 - 51910002 / `-`

ID 对照

NCBI Gene ID	`LOC130991999`
GeneID	`130991999`
locus_tag	`-`
NCBI Name	`LOC130991999`
原始查询	`LOC130991999`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DUF868 family protein (DUF868) [Source:NCBI gene (formerly Entrezgene);Acc:814959]; symbol=AT2G04220; hit=AT2G04220; species=arabidopsis; confidence=high
产物	DUF868 family protein (DUF868) [Source:NCBI gene (formerly Entrezgene);Acc:814959]; symbol=AT2G04220; hit=AT2G04220; species=arabidopsis; confidence=high
Arabidopsis	`AT2G04220` (AT2G04220) DUF868 family protein (DUF868) [Source:NCBI gene (formerly Entrezgene);Acc:814959] identity=60.9; qcov=1.01; evalue=8.31e-129; confidence=high
Rice	`Os02g0198800` - identity=46.1; qcov=0.767; evalue=6.12e-73; confidence=high
GO	-
KEGG	-
Pfam	PF05910 (DUF868)
InterPro	-
eggNOG	-
NR	GeneID:130991999

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057772436.1`
2	Cytoplasm	细胞质	0.60000	`XP_057772436.1`
3	Cytosol	细胞质基质	0.20000	`XP_057772436.1`
4	Chromosome	染色体	0.00000	`XP_057772436.1`
5	Centromere	着丝粒	0.00000	`XP_057772436.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:51908709`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B25,B84
`Chr1:51908769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr1:51909053`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B4,B61,C3,C70,C8
`Chr1:51909249`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B100,C39
`Chr1:51909261`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B100,C39,C58
`Chr1:51909292`	`C`	`T`	EMS_canonical_SNV	stop_gained	9	A11,A16,B115,B13,B66,B85,C10,C31,C57
`Chr1:51909314`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B115,B85,C10,C57
`Chr1:51909370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr1:51909420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr1:51909423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,A16,C44,C55
`Chr1:51909443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B134,C44,C55
`Chr1:51909444`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B137,C23,C30,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772436.1

305 aa

152

305

DUF868

PF05910 DUF868 30-303 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772436.1`	Pfam	`PF05910`	DUF868	Family	30	303	4.8e-100	335.4	Plant protein of unknown function (DUF868)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009091225.1
ATTTATTGAATAAATATTAGTAGTACTCATTTAGAAAGAATCTAGAGGCGCGAGGAAGTCATTCCAATTTAGGACCCTTCCTTTGAGGAGAACCTCTTCCCCCGCAAAACTGTTTTTCCTCCACAGATTTAATCTTTTTTCCTCAACTTTTCGTGTTTCGTTTCCCCAGAAAAACAAAAGACAAAATAAAATAAAATAAAAATCCCCCAAATAAAATTTCCATGAAATTTTCCTAATTGCCATCAACCTGTTGGAATTCC...

XM_057916453.1
ATTTATTGAATAAATATTAGTAGTACTCATTTAGAAAGAATCTAGAGGCGCGAGGAAGTCATTCCAATTTAGGACCCTTCCTTTGAGGAGAACCTCTTCCCCCGCAAAACTGTTTTTCCTCCACAGATTTAATCTTTTTTCCTCAACTTTTCGTGTTTCGTTTCCCCAGAAAAACAAAAGACAAAATAAAATAAAATAAAAATCCCCCAAATAAAATTTCCATGAAATTTTCCTAATTGCCATCAACCTGTTGGAATTCC...

CDS

1 records

下载 CDS FASTA

LOC130991999
ATGGCGAGCATCCGCAGCTCTTCCCGGGCGTATTCGATATCCTCGGCGCATCAGTCTCCGGCGAGATCAACCGATCACAAAATCCCGCAGTGCACGGTGACGTGCGTGTACCAGACGCCCATCGCCGGCTACTGGCGCAACGTGACTGTGGTGTGGAGCAAGAACATCATGGTGAACTCGGTCTGCATCTCCGTGGACAGCGTGGAGCGCGATCAAGTCTGCACGTGCAAGCTCGAGCTTAAACCCTGGCATTTCTGGGC...

Protein

1 records

下载 Protein FASTA

XP_057772436.1
MASIRSSSRAYSISSAHQSPARSTDHKIPQCTVTCVYQTPIAGYWRNVTVVWSKNIMVNSVCISVDSVERDQVCTCKLELKPWHFWARKGYKTFMVDGTQLELYWDFRSAKFTGPEPNKDFYVALVSDEELVLLLGDMEKKAQKRTKARPALVEALMFYKEEHVFGKKSFSTRARFDHQSKEHDVVVESSTSGNKDPEMWISIDGIVLIHIRNLQWKFRGNQTVMVNKQPVQVFWDVYAWLFCHPGADHGLFIFKPGGGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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