Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000838

染色体: Chr07 坐标: 5967315-5969885 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000838
名称SmilChr07G000838
描述uncharacterized SmilChr07G000838
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向5967315 - 5969885 / -

ID 对照

NCBI Gene IDLOC130992008
GeneID130992008
locus_tag-
NCBI NameLOC130992008
原始查询LOC130992008

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819672]; symbol=AT3G05100; hit=AT3G05100; species=arabidopsis; confidence=high
产物S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819672]; symbol=AT3G05100; hit=AT3G05100; species=arabidopsis; confidence=high
ArabidopsisAT3G05100 (AT3G05100)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819672]
identity=71.5; qcov=1.01; evalue=1.73e-171; confidence=high
RiceOs07g0667400 (P0450A04.130)
-
identity=68.3; qcov=1.02; evalue=1.16e-154; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130992008

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057772440.1
2 Endoplasmic reticulum 内质网 0.20000 XP_057772440.1
3 Nucleus 细胞核 0.00000 XP_057772440.1
4 Chromosome 染色体 0.00000 XP_057772440.1
5 Centromere 着丝粒 0.00000 XP_057772440.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:5967676 G A EMS_canonical_SNV CDS_variant 2 B99,C3
Chr7:5967756 C T EMS_canonical_SNV CDS_variant 4 B2,B78,C14,C73
Chr7:5967898 G A EMS_canonical_SNV CDS_variant 5 B9,B91,C32,C39,C68
Chr7:5968011 G A EMS_canonical_SNV CDS_variant 1 C46
Chr7:5968193 C T EMS_canonical_SNV CDS_variant 5 B117,B130,B52,B89,D10
Chr7:5968222 G A EMS_canonical_SNV CDS_variant 3 B104,B99,C3
Chr7:5968421 C T EMS_canonical_SNV CDS_variant 5 B129,B30,B82,C41,C9
Chr7:5968504 C T EMS_canonical_SNV CDS_variant 4 A14,B103,C86,D11
Chr7:5968510 G A EMS_canonical_SNV CDS_variant 4 A2,B131,B56,B96

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057916457.1
ATTATTGCACAGGTGGAGCGATATACCAAAAATGCCCTCTACTATTTTCCTTGAATGCCTCTATTACCCTCGGCTGCAATTCAATCTGCAAATCTCAGATGAAATCACACCGCCACAGATATTATTGCTTCTCCAATTCATCGGCGACGATATCCGCCATTGACGACCGATTCCCGAAGATCTCAAACTCGCCATCGACCAACGCCTCCACTCAGTCTCAAGCTTTTTCTGTATTCTGGAAATTCATCGATTTAGGTTTT...
XM_057916458.1
CGGCTGCAATTCAATCTGCAAATCTCAGATGAAATCACACCGCCACAGATATTATTGCTTCTCCAATTCATCGGCGACGATATCCGCCATTGACGACCGATTCCCGAAGATCTCAAACTCGCCATCGACCAACGCCTCCACTCAGTCTCAAGCTTTTTCTGTATTCTGGAAATTCATCGATTTAGGTTTTCTCAGAGAAGGAGTAGTTTGTATTGTCGTCTCAGATTCACAATCGGTTTCGTCGTTATCCCTCGGAACTT...

CDS

2 records

下载 CDS FASTA
LOC130992008
ATGGCACTGCTTCCGTCAAAGGGAGTGGTGATTTCAGTTCCCACCCTCATTCTATCAGCTGCAGCTTTTGCAATCCTCCTATTCTTCTTGCTCTCAGCCACCTCGCCCCCCGCTGCTCCTTGCTCTTGCCCCATCCCTACTGGGGACTATAGCAGCAAGGTAGGTGGACAGCGTGTTACAACCTCAGCTGAGGACATAGATTGGTTGAAGAGTCGTGTTGAAGCCAATGGATTACATATGCAGCAGAACATTCTACGCAA...
LOC130992008
ATGGCACTGCTTCCGTCAAAGGGAGTGGTGATTTCAGTTCCCACCCTCATTCTATCAGCTGCAGCTTTTGCAATCCTCCTATTCTTCTTGCTCTCAGCCACCTCGCCCCCCGCTGCTCCTTGCTCTTGCCCCATCCCTACTGGGGACTATAGCAGCAAGGTAGGTGGACAGCGTGTTACAACCTCAGCTGAGGACATAGATTGGTTGAAGAGTCGTGTTGAAGCCAATGGATTACATATGCAGCAGAACATTCTACGCAA...

Protein

2 records

下载 Protein FASTA
XP_057772440.1
MALLPSKGVVISVPTLILSAAAFAILLFFLLSATSPPAAPCSCPIPTGDYSSKVGGQRVTTSAEDIDWLKSRVEANGLHMQQNILRKGINPRTRQQQLQDLLQFKGISHYEGEDANNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAESAHLTPNSRVLEIGCGTLRVGLHFIRYLDPENFHCLERDELSLMAALRYELPSQGLLYKRPLIVRGEDMDFSKFGSDTVYDLIYASAVFLHMPDKLVWTGLERLVGRL...
XP_057772441.1
MALLPSKGVVISVPTLILSAAAFAILLFFLLSATSPPAAPCSCPIPTGDYSSKVGGQRVTTSAEDIDWLKSRVEANGLHMQQNILRKGINPRTRQQQLQDLLQFKGISHYEGEDANNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAESAHLTPNSRVLEIGCGTLRVGLHFIRYLDPENFHCLERDELSLMAALRYELPSQGLLYKRPLIVRGEDMDFSKFGSDTVYDLIYASAVFLHMPDKLVWTGLERLVGRL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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