当前解析结果
SmilChr07G000849| 统一新 Gene ID | SmilChr07G000849 |
|---|---|
| 名称 | SmilChr07G000849 |
| 描述 | uncharacterized SmilChr07G000849 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 6055501 - 6059166 / + |
| NCBI Gene ID | LOC130992022 |
|---|---|
| GeneID | 130992022 |
| locus_tag | - |
| NCBI Name | LOC130992022 |
| 原始查询 | LOC130992022 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837239]; symbol=AT1G07280; hit=AT1G07280; species=arabidopsis; confidence=high |
| 产物 | Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837239]; symbol=AT1G07280; hit=AT1G07280; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G07280 (AT1G07280)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837239] identity=51.8; qcov=1.02; evalue=0; confidence=high |
| Rice | Os01g0855200- identity=47.8; qcov=0.874; evalue=5.44e-125; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992022 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057772461.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.80000 | XP_057772461.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057772461.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057772461.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772461.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:6056192 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr7:6056309 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:6056347 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:6056354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:6056651 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:6056756 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:6056912 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B3,C15,D6 |
Chr7:6056957 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C35 |
Chr7:6057257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr7:6057263 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr7:6057449 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr7:6057542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,B85,C26,D7 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。