当前解析结果
SmilChr07G000853| 统一新 Gene ID | SmilChr07G000853 |
|---|---|
| 名称 | SmilChr07G000853 |
| 描述 | protein DAMAGED DNA-BINDING 2 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 6077030 - 6082154 / + |
| NCBI Gene ID | LOC130992028 |
|---|---|
| GeneID | 130992028 |
| locus_tag | - |
| NCBI Name | LOC130992028 |
| 原始查询 | LOC130992028 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein DAMAGED DNA-BINDING 2 |
| 产物 | protein DAMAGED DNA-BINDING 2 |
| Arabidopsis | AT5G58760 (DDB2)damaged DNA binding 2 [Source:NCBI gene (formerly Entrezgene);Acc:835990] identity=66.2; qcov=0.93; evalue=0; confidence=high |
| Rice | Os01g0141700 (OsWD40-2)- identity=64.1; qcov=0.876; evalue=0; confidence=high |
| GO | GO:0003684 (damaged DNA binding); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006281 (DNA repair); GO:0009411 (response to UV); GO:0080008 (Cul4-RING E3 ubiquitin ligase complex) |
| KEGG | smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)); smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00400 (WD40) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992028 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772470.1 |
| 2 | Nucleoplasm | 核质 | 0.80000 | XP_057772470.1 |
| 3 | Nuclear body | 核内小体 | 0.20000 | XP_057772470.1 |
| 4 | Nucleolus | 核仁 | 0.20000 | XP_057772470.1 |
| 5 | Nucleolar fibrillar center | Nucleolar fibrillar center | 0.20000 | XP_057772470.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:6077322 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,C64,C66,C85 |
Chr7:6077609 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr7:6077632 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr7:6077784 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B111,B138,C33 |
Chr7:6077805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,C33,C63 |
Chr7:6077847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,C33,C63 |
Chr7:6077883 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B133 |
Chr7:6077886 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B133 |
Chr7:6078755 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,C36,C85 |
Chr7:6078964 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,C63,D10 |
Chr7:6079027 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B3,C15,D6 |
Chr7:6080234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772470.1PF00400
WD40 167-201 aa
PF00400
WD40 313-342 aa
PF00400
WD40 351-387 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772470.1 |
Pfam | PF00400 |
WD40 | Repeat | 167 | 201 | 2.5e-15 | 56.9 | WD domain, G-beta repeat |
XP_057772470.1 |
Pfam | PF00400 |
WD40 | Repeat | 313 | 342 | 2.5e-15 | 56.9 | WD domain, G-beta repeat |
XP_057772470.1 |
Pfam | PF00400 |
WD40 | Repeat | 351 | 387 | 2.5e-15 | 56.9 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。