当前解析结果
SmilChr07G000869| 统一新 Gene ID | SmilChr07G000869 |
|---|---|
| 名称 | SmilChr07G000869 |
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 6227334 - 6228796 / - |
| NCBI Gene ID | LOC130992044 |
|---|---|
| GeneID | 130992044 |
| locus_tag | - |
| NCBI Name | LOC130992044 |
| 原始查询 | LOC130992044 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 产物 | F-box/kelch-repeat protein At3g23880-like |
| Arabidopsis | AT5G50220 (AT5G50220)F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:835087] identity=25.1; qcov=0.935; evalue=1.42e-18; confidence=low |
| Rice | Os09g0447600- identity=35.1; qcov=0.52; evalue=2.86e-21; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like); PF23635 (Beta-prop_AT5G49610-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992044 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057772490.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057772490.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057772490.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772490.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772490.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:6227610 |
ATT |
A |
2bp_deletion | frameshift_variant | 12 | A18,A8,B113,B125,B132,B37,B64,B66,B78,B89,C14,C8 |
Chr7:6227745 |
C |
CCT |
2bp_insertion | frameshift_variant | 19 | A18,A22,A8,B100,B125,B130,B132,B137,B16,B34,B64,B78,B89,B98,C14,C33,C45,C8,D4 |
Chr7:6227785 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C44,C71 |
Chr7:6227952 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr7:6227994 |
CA |
C |
1bp_deletion | frameshift_variant | 13 | A10,A14,A18,A22,B100,B113,B130,B16,B34,B98,C76,C8,D4 |
Chr7:6228000 |
C |
CA |
1bp_insertion | frameshift_variant | 13 | A10,A14,A18,A22,B100,B113,B130,B16,B34,B98,C76,C8,D4 |
Chr7:6228005 |
T |
TTA |
2bp_insertion | frameshift_variant | 2 | A18,C8 |
Chr7:6228005 |
T |
TTA |
2bp_insertion | CDS_variant | 2 | A18,C8 |
Chr7:6228007 |
AAT |
A |
2bp_deletion | frameshift_variant | 2 | A18,C8 |
Chr7:6228007 |
AAT |
A |
2bp_deletion | CDS_variant | 2 | A18,C8 |
Chr7:6228044 |
CAA |
C |
2bp_deletion | frameshift_variant | 7 | A10,A14,B100,B130,B34,B98,D4 |
Chr7:6228047 |
GT |
G |
1bp_deletion | frameshift_variant | 2 | A18,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772490.1PF12937
F-box-like 17-51 aa
PF00646
F-box 17-54 aa
PF07734
FBA_1 81-359 aa
PF08268
FBA_3 83-344 aa
PF03478
Beta-prop_KIB1-4 97-292 aa
PF23635
Beta-prop_AT5G49610-like 140-295 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772490.1 |
Pfam | PF12937 |
F-box-like | Domain | 17 | 51 | 1.4e-09 | 38.3 | F-box-like |
XP_057772490.1 |
Pfam | PF00646 |
F-box | Domain | 17 | 54 | 1.3e-11 | 44.6 | F-box domain |
XP_057772490.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 81 | 359 | 5e-20 | 72.5 | F-box associated beta propeller domain |
XP_057772490.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 83 | 344 | 7.4e-23 | 81.8 | F-box associated beta propeller domain |
XP_057772490.1 |
Pfam | PF03478 |
Beta-prop_KIB1-4 | Repeat | 97 | 292 | 2.8e-10 | 40.8 | KIB1-4 beta-propeller |
XP_057772490.1 |
Pfam | PF23635 |
Beta-prop_AT5G49610-like | Repeat | 140 | 295 | 1.2e-08 | 35.2 | F-box protein AT5G49610-like, beta-propeller |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。