当前解析结果
SmilChr07G000872| 统一新 Gene ID | SmilChr07G000872 |
|---|---|
| 名称 | SmilChr07G000872 |
| 描述 | pentatricopeptide repeat-containing protein At2g30100, chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 6245831 - 6249560 / - |
| NCBI Gene ID | LOC130992045 |
|---|---|
| GeneID | 130992045 |
| locus_tag | - |
| NCBI Name | LOC130992045 |
| 原始查询 | LOC130992045 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At2g30100, chloroplastic |
| 产物 | pentatricopeptide repeat-containing protein At2g30100%2C chloroplastic |
| Arabidopsis | AT2G30100 (AT2G30100)pentatricopeptide (PPR) repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817561] identity=63.6; qcov=0.909; evalue=0; confidence=high |
| Rice | Os05g0353300- identity=56.8; qcov=0.802; evalue=3.32e-163; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992045 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057772491.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057772491.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057772491.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057772491.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057772491.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:6246190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B114,B125,B136,B77,C63 |
Chr7:6246277 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:6246280 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr7:6246379 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C25,C39 |
Chr7:6246412 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,A3,C33 |
Chr7:6246413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,A9,B126,C60 |
Chr7:6246430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr7:6246520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr7:6246585 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,B125 |
Chr7:6246678 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,A9,B100,B11 |
Chr7:6246736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:6246808 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。