Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000885`

染色体: Chr07 坐标: 6345055-6348080 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000885`
名称	SmilChr07G000885
描述	cation/H(+) antiporter 24
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	6345055 - 6348080 / `+`

ID 对照

NCBI Gene ID	`LOC130992058`
GeneID	`130992058`
locus_tag	`-`
NCBI Name	`LOC130992058`
原始查询	`LOC130992058`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cation/H(+) antiporter 24
产物	cation/H(+) antiporter 24
Arabidopsis	`AT5G37060` (CHX24) cation/H+ exchanger 24 [Source:NCBI gene (formerly Entrezgene);Acc:833677] identity=43.5; qcov=1.04; evalue=0; confidence=medium
Rice	`Os05g0473401` (OsCHX05) - identity=31.7; qcov=0.997; evalue=1.74e-103; confidence=low
GO	GO:0006885 (regulation of pH); GO:0012505 (endomembrane system); GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport)
KEGG	-
Pfam	PF00999 (Na_H_Exchanger); PF23256 (CHX17_2nd); PF23259 (CHX17_C)
InterPro	-
eggNOG	-
NR	GeneID:130992058

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057772510.1`
2	Vacuole	液泡	0.20000	`XP_057772514.1`
3	Nucleus	细胞核	0.00000	`XP_057772510.1`
4	Chromosome	染色体	0.00000	`XP_057772510.1`
5	Centromere	着丝粒	0.00000	`XP_057772510.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:6345196`	`TC`	`T`	1bp_deletion	frameshift_variant	98	A1,A11,A24,A3,A5,A7,A8,B10,B101,B107,B109,B112,B115,B117,B118,B12,B122,B126,B13,B132,B134,B137,B138,B17,B18,B20,B21,B22,B23,B25,B28,B31,B41,B42,B43,B46,B6,B63,B64,B70,B73,B75,B77,B80,B81,B82,B83,B84,B85,B87,B88,B9,B90,B92,B97,B98,C10,C11,C13,C16,C17,C2,C21,C23,C24,C26,C30,C32,C34,C37,C40,C42,C44,C48,C5,C50,C52,C53,C54,C56,C58,C59,C67,C68,C69,C7,C70,C72,C75,C77,C79,C8,C80,C81,C82,D4,D5,D9
`Chr7:6345259`	`TA`	`T`	1bp_deletion	frameshift_variant	11	A4,A6,B106,B127,B36,C26,C50,C6,C63,C79,D2
`Chr7:6345265`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B10,B107,B138,C37,D9
`Chr7:6345266`	`C`	`T`	EMS_canonical_SNV	stop_gained	7	B108,B125,B26,B43,B61,B77,B80
`Chr7:6345277`	`C`	`CAA`	2bp_insertion	frameshift_variant	1	B75
`Chr7:6345277`	`C`	`CAA`	2bp_insertion	CDS_variant	1	B75
`Chr7:6345377`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C42,D6
`Chr7:6345394`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr7:6345399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,B21,C11,C69
`Chr7:6345406`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C42,D6
`Chr7:6345422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C42,D6
`Chr7:6345427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C42,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772510.1

826 aa

413

826

Na_H_Exchanger

CHX17_2nd

CHX17_C

PF00999 Na_H_Exchanger 78-457 aa PF23256 CHX17_2nd 516-640 aa PF23259 CHX17_C 654-796 aa

XP_057772511.1

801 aa

400

801

Na_H_Exchanger

CHX17_2nd

CHX17_C

PF00999 Na_H_Exchanger 78-457 aa PF23256 CHX17_2nd 516-591 aa PF23259 CHX17_C 629-771 aa

XP_057772512.1

796 aa

398

796

Na_H_Exchanger

CHX17_2nd

CHX17_C

PF00999 Na_H_Exchanger 64-427 aa PF23256 CHX17_2nd 486-610 aa PF23259 CHX17_C 624-766 aa

XP_057772513.1

790 aa

395

790

Na_H_Exchanger

CHX17_2nd

CHX17_C

PF00999 Na_H_Exchanger 114-421 aa PF23256 CHX17_2nd 480-604 aa PF23259 CHX17_C 618-760 aa

XP_057772514.1

661 aa

330

661

Na_H_Exchanger

CHX17_2nd

CHX17_C

PF00999 Na_H_Exchanger 31-292 aa PF23256 CHX17_2nd 351-475 aa PF23259 CHX17_C 489-631 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772510.1`	Pfam	`PF00999`	Na_H_Exchanger	Domain	78	457	4.5e-39	135.1	Sodium/hydrogen exchanger, transmembrane
`XP_057772510.1`	Pfam	`PF23256`	CHX17_2nd	Domain	516	640	1.8e-31	109.6	Plant cation/H(+) antiporter domain
`XP_057772510.1`	Pfam	`PF23259`	CHX17_C	Domain	654	796	3.2e-47	161.0	Plant cation/H(+) antiporter, C-terminal domain
`XP_057772511.1`	Pfam	`PF00999`	Na_H_Exchanger	Domain	78	457	4.2e-39	135.2	Sodium/hydrogen exchanger, transmembrane
`XP_057772511.1`	Pfam	`PF23256`	CHX17_2nd	Domain	516	591	1.6e-19	71.0	Plant cation/H(+) antiporter domain
`XP_057772511.1`	Pfam	`PF23259`	CHX17_C	Domain	629	771	3e-47	161.1	Plant cation/H(+) antiporter, C-terminal domain
`XP_057772512.1`	Pfam	`PF00999`	Na_H_Exchanger	Domain	64	427	9.6e-32	111.0	Sodium/hydrogen exchanger, transmembrane
`XP_057772512.1`	Pfam	`PF23256`	CHX17_2nd	Domain	486	610	1.7e-31	109.7	Plant cation/H(+) antiporter domain
`XP_057772512.1`	Pfam	`PF23259`	CHX17_C	Domain	624	766	3e-47	161.1	Plant cation/H(+) antiporter, C-terminal domain
`XP_057772513.1`	Pfam	`PF00999`	Na_H_Exchanger	Domain	114	421	2.1e-29	103.2	Sodium/hydrogen exchanger, transmembrane
`XP_057772513.1`	Pfam	`PF23256`	CHX17_2nd	Domain	480	604	1.6e-31	109.7	Plant cation/H(+) antiporter domain
`XP_057772513.1`	Pfam	`PF23259`	CHX17_C	Domain	618	760	3e-47	161.1	Plant cation/H(+) antiporter, C-terminal domain
`XP_057772514.1`	Pfam	`PF00999`	Na_H_Exchanger	Domain	31	292	6.9e-27	95.0	Sodium/hydrogen exchanger, transmembrane
`XP_057772514.1`	Pfam	`PF23256`	CHX17_2nd	Domain	351	475	1.2e-31	110.1	Plant cation/H(+) antiporter domain
`XP_057772514.1`	Pfam	`PF23259`	CHX17_C	Domain	489	631	2.2e-47	161.5	Plant cation/H(+) antiporter, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057916527.1
ATATATATTGATCAAGTGTCAAATTATACACACATATTTACACTTGAGCATAAACGAAAGGTGACATTTGCAGCTTTTCCAAACAACAAAACTGAAGTTACGGCAGACCGTTAATTAGTTTCTTGCAACGTCCATGCATGATCCCCCTCAATCCTCATTGTGCAGTAAAAGAAATTCCTTTACTGTAAATCTATGGAAGAATTGTAAAAGGCAAGAAACCTTCAAAATGTCGATGGAGAACGGACTTTTTATATGTCGGA...

XM_057916528.1
ATATATATTGATCAAGTGTCAAATTATACACACATATTTACACTTGAGCATAAACGAAAGGTGACATTTGCAGCTTTTCCAAACAACAAAACTGAAGTTACGGCAGACCGTTAATTAGTTTCTTGCAACGTCCATGCATGATCCCCCTCAATCCTCATTGTGCAGTAAAAGAAATTCCTTTACTGTAAATCTATGGAAGAATTGTAAAAGGCAAGAAACCTTCAAAATGTCGATGGAGAACGGACTTTTTATATGTCGGA...

CDS

5 records

下载 CDS FASTA

LOC130992058
ATGCATGATCCCCCTCAATCCTCATTGTGCAGTAAAAGAAATTCCTTTACTGTAAATCTATGGAAGAATTGTAAAAGGCAAGAAACCTTCAAAATGTCGATGGAGAACGGACTTTTTATATGTCGGAAGAAATTTAACGATAATCTCTTCGGCGTTTTCTTTGGCCAAAATCCATTAAAATCATCTTTTCCCCTTGTTCTGTTGGAGTTGACGTTTCTCATATGTGTTTCTCGCGTCGTCCGGCTTCTCCTCAAGCCCTT...

Protein

5 records

下载 Protein FASTA

XP_057772510.1
MHDPPQSSLCSKRNSFTVNLWKNCKRQETFKMSMENGLFICRKKFNDNLFGVFFGQNPLKSSFPLVLLELTFLICVSRVVRLLLKPFGQPKVISEIIGGIILGPSVLCRSEKFRMYMFPDNAFYVIQNMGLIGFMYFLFISGVKMDIFAVRKADKKHWYIALVGVMGPLCCSIAVAFSWRKSMDTKMVKASSIWGITSSLAMTAFPVLYPIMKELNLLSSEIGRVALSIAVIGDVIGMNGVVIFEASKQGEGKPIAALWY...

XP_057772511.1
MHDPPQSSLCSKRNSFTVNLWKNCKRQETFKMSMENGLFICRKKFNDNLFGVFFGQNPLKSSFPLVLLELTFLICVSRVVRLLLKPFGQPKVISEIIGGIILGPSVLCRSEKFRMYMFPDNAFYVIQNMGLIGFMYFLFISGVKMDIFAVRKADKKHWYIALVGVMGPLCCSIAVAFSWRKSMDTKMVKASSIWGITSSLAMTAFPVLYPIMKELNLLSSEIGRVALSIAVIGDVIGMNGVVIFEASKQGEGKPIAALWY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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