当前解析结果
SmilChr07G000909| 统一新 Gene ID | SmilChr07G000909 |
|---|---|
| 名称 | SmilChr07G000909 |
| 描述 | CBL-interacting serine/threonine-protein kinase 11 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 6495237 - 6497247 / - |
| NCBI Gene ID | LOC130992083 |
|---|---|
| GeneID | 130992083 |
| locus_tag | - |
| NCBI Name | LOC130992083 |
| 原始查询 | LOC130992083 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CBL-interacting serine/threonine-protein kinase 11 |
| 产物 | CBL-interacting serine/threonine-protein kinase 11 |
| Arabidopsis | AT2G30360 (SIP4)SOS3-interacting protein 4 [Source:NCBI gene (formerly Entrezgene);Acc:817586] identity=63; qcov=0.941; evalue=0; confidence=high |
| Rice | Os07g0678600 (OsCIPK02)- identity=52.9; qcov=0.975; evalue=1.4e-152; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03822 (NAF); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992083 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057772539.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057772539.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057772539.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057772539.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772539.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:6495691 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C45 |
Chr7:6495697 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C47,D10 |
Chr7:6495721 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr7:6495742 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr7:6495772 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr7:6495785 |
AC |
A |
1bp_deletion | frameshift_variant | 3 | B104,B35,C45 |
Chr7:6495785 |
AC |
A |
1bp_deletion | CDS_variant | 3 | B104,B35,C45 |
Chr7:6495867 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B35,C45 |
Chr7:6495939 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C45 |
Chr7:6495969 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr7:6496064 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B40,B9 |
Chr7:6496126 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,B14,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772539.1PF00069
Pkinase 35-290 aa
PF07714
PK_Tyr_Ser-Thr 37-286 aa
PF06293
Kdo 51-171 aa
PF14531
Kinase-like 132-240 aa
PF03822
NAF 316-367 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772539.1 |
Pfam | PF00069 |
Pkinase | Domain | 35 | 290 | 1.3e-74 | 251.6 | Protein kinase domain |
XP_057772539.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 37 | 286 | 2.3e-38 | 132.7 | Protein tyrosine and serine/threonine kinase |
XP_057772539.1 |
Pfam | PF06293 |
Kdo | Family | 51 | 171 | 0.00011 | 22.4 | Lipopolysaccharide kinase (Kdo/WaaP) family |
XP_057772539.1 |
Pfam | PF14531 |
Kinase-like | Family | 132 | 240 | 8.3e-10 | 39.1 | Kinase-like |
XP_057772539.1 |
Pfam | PF03822 |
NAF | Domain | 316 | 367 | 2.2e-16 | 60.4 | NAF domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。