Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000959`

染色体: Chr07 坐标: 6905168-6913147 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000959`
名称	SmilChr07G000959
描述	ubiquitin carboxyl-terminal hydrolase 5
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	6905168 - 6913147 / `-`

ID 对照

NCBI Gene ID	`LOC130992107`
GeneID	`130992107`
locus_tag	`-`
NCBI Name	`LOC130992107`
原始查询	`LOC130992107`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin carboxyl-terminal hydrolase 5
产物	ubiquitin carboxyl-terminal hydrolase 5
Arabidopsis	`AT2G40930` (UBP5) ubiquitin-specific protease 5 [Source:NCBI gene (formerly Entrezgene);Acc:818691] identity=65.6; qcov=0.995; evalue=0; confidence=high
Rice	`Os10g0160000` - identity=45.8; qcov=0.995; evalue=0; confidence=high
GO	GO:0004843 (cysteine-type deubiquitinase activity); GO:0016579 (protein deubiquitination)
KEGG	-
Pfam	PF00443 (UCH); PF06337 (DUSP); PF13423 (UCH_1); PF25242 (Ubiquitin_UBP8)
InterPro	-
eggNOG	-
NR	GeneID:130992107

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057772589.1`
2	Cytoplasm	细胞质	1.00000	`XP_057772589.1`
3	Chromosome	染色体	0.00000	`XP_057772589.1`
4	Centromere	着丝粒	0.00000	`XP_057772589.1`
5	Chromatin	染色质	0.00000	`XP_057772589.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:6905512`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr7:6905855`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:6905933`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr7:6906594`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr7:6906746`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr7:6907355`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr7:6908301`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr7:6909123`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B74,C14,C65
`Chr7:6909268`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr7:6909409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr7:6909412`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,B74,C14,C65
`Chr7:6910754`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772589.1

925 aa

462

925

DUSP

Ubiquitin_UBP8

UCH

UCH_1

PF06337 DUSP 31-135 aa PF25242 Ubiquitin_UBP8 163-202 aa PF00443 UCH 306-898 aa PF13423 UCH_1 749-880 aa

XP_057772590.1

924 aa

462

924

DUSP

Ubiquitin_UBP8

UCH

UCH_1

PF06337 DUSP 31-135 aa PF25242 Ubiquitin_UBP8 163-202 aa PF00443 UCH 305-897 aa PF13423 UCH_1 748-879 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772589.1`	Pfam	`PF06337`	DUSP	Domain	31	135	1.1e-20	74.5	DUSP domain
`XP_057772589.1`	Pfam	`PF25242`	Ubiquitin_UBP8	Domain	163	202	7e-08	32.8	UBP8-like, ubiquitin-like domain
`XP_057772589.1`	Pfam	`PF00443`	UCH	Family	306	898	2.8e-78	263.8	Ubiquitin carboxyl-terminal hydrolase
`XP_057772589.1`	Pfam	`PF13423`	UCH_1	Domain	749	880	8.8e-14	52.6	Ubiquitin carboxyl-terminal hydrolase
`XP_057772590.1`	Pfam	`PF06337`	DUSP	Domain	31	135	1.2e-20	74.5	DUSP domain
`XP_057772590.1`	Pfam	`PF25242`	Ubiquitin_UBP8	Domain	163	202	7e-08	32.8	UBP8-like, ubiquitin-like domain
`XP_057772590.1`	Pfam	`PF00443`	UCH	Family	305	897	2.8e-78	263.8	Ubiquitin carboxyl-terminal hydrolase
`XP_057772590.1`	Pfam	`PF13423`	UCH_1	Domain	748	879	8.7e-14	52.6	Ubiquitin carboxyl-terminal hydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916607.1
TACCATTCTTAACCTCGTATCTCTGTGTCTCAAATCATCTCCATATTTTTTATTATTGAAACTGGAAAATTATAATCTGCAACTCTCTCTCTCTCCATAGAAAATTATACTGTAGTAATAAAAATCTGAAACTCACGTATGAGTGTATCAGTTAAAAAGGTGTTCTCTACACAGTGTGAGGTGGCGCTATTCCAACTTCAACTGTACAAACCCAAAAACCCTTGCTCATCCCCTCCTCTTCTCCCTCTCTCAGCTAAGCT...

XM_057916606.1
ATTGAAACTGGAAAATTATAATCTGCAACTCTCTCTCTCTCCATAGAAAATTATACTGTAGTAATAAAAATCTGAAACTCACGTATGAGTGTATCAGTTAAAAAGGTGTTCTCTACACAGTGTGAGGTGGCGCTATTCCAACTTCAACTGTACAAACCCAAAAACCCTTGCTCATCCCCTCCTCTTCTCCCTCTCTCAGCTAAGCTGCTTTCACTCTCACTTGTAACGCCCACGCCCAAAATCACTGCAGATTACCCTTT...

CDS

2 records

下载 CDS FASTA

LOC130992107
ATGGCGGAGGTGGCGCGGCAGCTCACGCCCGAAGAAGAGAAGCAAGCCGTTAGAGACATTGCTGTGGCCGCCGAAGCCCAGACCAAAGTCGGCGACACTTTCTATTTAATCACTCAGAGATGGTGGCAAGACTGGCTTGAGTATGTAAACCAAACTAGCATTGTTAATGATGGATCTTCCTCCGAGCATCAGGGAGCAGTCAGCTCGAGTGCATTGAAGAAACCATCTTGCATTGACAATTCTGATTTAATAGATGAAGC...

Protein

2 records

下载 Protein FASTA

XP_057772589.1
MAEVARQLTPEEEKQAVRDIAVAAEAQTKVGDTFYLITQRWWQDWLEYVNQTSIVNDGSSSEHQGAVSSSALKKPSCIDNSDLIDEAVSEDSAMGIELHDTLVEGTDYILLPKEVWNKLHTLYGGGPVLARKVINTGLSQTELSVEVYPLRLELHLMPKGDRSSIRISKKETIGELHRKACEIFDLTPKQVSIWDYFSHQKHALMNDMEKTLDDANIQMDQDQILVEVINIKTEGGLSSHQENGSMNNGSLTAATSHSSI...

XP_057772590.1
MAEVARQLTPEEEKQAVRDIAVAAEAQTKVGDTFYLITQRWWQDWLEYVNQTSIVNDGSSSEHQGAVSSSALKKPSCIDNSDLIDEAVSEDSAMGIELHDTLVEGTDYILLPKEVWNKLHTLYGGGPVLARKVINTGLSQTELSVEVYPLRLELHLMPKGDRSSIRISKKETIGELHRKACEIFDLTPKQVSIWDYFSHQKHALMNDMEKTLDDANIQMDQDILVEVINIKTEGGLSSHQENGSMNNGSLTAATSHSSIA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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